Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | LIT28_RS00525 | Genome accession | NZ_CP085409 |
| Coordinates | 95066..97501 (+) | Length | 811 a.a. |
| NCBI ID | WP_060629199.1 | Uniprot ID | - |
| Organism | Bacillus thuringiensis strain KF1 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 90066..102501
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIT28_RS00510 (LIT28_00510) | ctsR | 92791..93252 (+) | 462 | WP_060629196.1 | transcriptional regulator CtsR | - |
| LIT28_RS00515 (LIT28_00515) | - | 93426..93974 (+) | 549 | WP_242256491.1 | UvrB/UvrC motif-containing protein | - |
| LIT28_RS00520 (LIT28_00520) | - | 93979..95043 (+) | 1065 | WP_242256490.1 | protein arginine kinase | - |
| LIT28_RS00525 (LIT28_00525) | clpC | 95066..97501 (+) | 2436 | WP_060629199.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| LIT28_RS00530 (LIT28_00530) | radA | 97598..98974 (+) | 1377 | WP_063222341.1 | DNA repair protein RadA | Machinery gene |
| LIT28_RS00535 (LIT28_00535) | disA | 98978..100051 (+) | 1074 | WP_242256488.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| LIT28_RS00540 (LIT28_00540) | - | 100212..101321 (+) | 1110 | WP_242256486.1 | PIN/TRAM domain-containing protein | - |
| LIT28_RS00545 (LIT28_00545) | ispD | 101338..102018 (+) | 681 | WP_242256484.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90516.31 Da Isoelectric Point: 6.4054
>NTDB_id=617851 LIT28_RS00525 WP_060629199.1 95066..97501(+) (clpC) [Bacillus thuringiensis strain KF1]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEASQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNAN
TPTLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEKQGQENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGADALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGE
SFVIHSAEKVK
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEASQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNAN
TPTLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEKQGQENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGADALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGE
SFVIHSAEKVK
Nucleotide
Download Length: 2436 bp
>NTDB_id=617851 LIT28_RS00525 WP_060629199.1 95066..97501(+) (clpC) [Bacillus thuringiensis strain KF1]
ATGATGTTTGGAAGATTTACAGAAAGAGCACAAAAAGTATTAGCTTTATCTCAAGAGGAAGCAATTCGCATTGGGCATAA
TAATATTGGAACAGAACATATTTTACTTGGGCTTGTACGCGAAGGGGAAGGAATTGCAGCAAAAGCGTTGATTGCTCTAG
GATTAAGTCCAGAGAAAGTTCAAAAAGAAGTAGAAGCGTTAATTGGACGCGGAACAGAAGCGTCTCAAACGGTACATTAT
ACACCGCGTGCTAAAAAGGTTATTGAGTTGTCTATGGATGAAGCTCGTAAATTAGGTCATTCTTACGTTGGAACAGAACA
TATCTTACTTGGTTTAATCCGTGAAGGTGAAGGTGTAGCGGCACGTGTTTTAAATAACTTAGGTGTTAGCCTAAATAAAG
CAAGACAACAAGTATTGCAACTTCTTGGAAGTAATGAAGCAAGTTCAGGTCACCAAGGTGGTTCTTCAACAAATGCAAAT
ACACCAACACTGGATAGCTTAGCACGTGATTTAACAGTTGTTGCACGTGAAAATCGTTTAGACCCTGTTATTGGGCGTGG
TAAAGAAATTCAACGTGTAATTGAAGTGTTAAGCCGTAGAACAAAAAACAATCCTGTATTAATTGGAGAGCCTGGTGTAG
GTAAAACGGCGATTGCTGAAGGATTAGCACAACAAATCGTAAATAATGAAGTTCCTGAAACTTTAAGAGATAAGCGTGTT
ATGACATTAGATATGGGTACAGTGGTAGCTGGAACGAAATATCGTGGTGAATTTGAAGATCGTTTGAAGAAAGTAATGGA
TGAAATCCGTCAGGCAGGAAATATTATTCTATTTATTGATGAACTTCATACATTAATTGGTGCAGGTGGAGCAGAAGGTG
CTATTGATGCATCGAACATTTTAAAACCTTCTTTAGCTCGCGGGGAGTTACAATGTATTGGGGCGACAACGTTAGATGAA
TATCGCAAATATATTGAAAAAGACGCGGCTTTAGAGAGACGTTTCCAACCAATTCATGTTGATGAGCCAAGTTTAGACGA
ATCAACTCAAATCTTGAAAGGTTTACGTGATCGCTATGAGGCACATCACCGCGTATCTATTACAGATGATGCAATTGATG
CAGCTGTAAAGCTTTCAGATCGTTATATTACAGATCGTTTCTTACCAGATAAAGCAATTGATTTAATTGATGAAGCTGCT
TCTAAGGTTCGCTTACGCTCTTATACAACACCACCAAATTTAAAAGAGCTTGAAGTGAAGCTTGAGGAAATTAGAAAAGA
AAAAGATGCAGCTGTACAAAGTCAAGAATTTGAAAAAGCTGCTTCCTTACGTGATATGGAACAACGCTTGCGTGAGAAGT
TAGAAGATACGAAGCGTCAGTGGAAAGAGAAACAAGGACAAGAAAACTCAGAAGTAACAGTAGAAGATATTGCAAATGTC
GTATCTACGTGGACGCGTATTCCGGTTTCTAAACTTGCACAAACAGAGACTGATAAATTATTAAACTTAGAATCCATTCT
TCACGATCGTGTTATTGGTCAAGATGAAGCGGTAGTAGCTGTAGCGAAAGCCGTTCGTCGTGCTAGAGCAGGATTGAAAG
ATCCGAAACGTCCGATTGGTTCATTTATTTTCTTAGGACCAACAGGTGTAGGTAAGACGGAGCTAGCAAGAGCGTTAGCG
GAATCTATGTTCGGTGATGAGGATGCAATGATTCGCATCGATATGTCTGAGTACATGGAGAAGCATTCTACCTCTCGTTT
AGTTGGATCTCCTCCAGGATATGTTGGATATGAAGAAGGTGGACAATTAACAGAAAAGGTTCGCCGTAAGCCATATTCAG
TTGTCCTATTAGATGAAGTAGAGAAAGCTCATCCTGATGTGTTTAATATTTTACTACAAGTATTAGAAGATGGTCGCTTA
ACGGATTCTAAAGGGCGTACGGTTGATTTCCGTAATACAATTGTTATTATGACATCTAACGTTGGTGCAGACGCGTTAAA
ACGTAATAAACATCTTGGATTTAACGTACAAGATGAGAGCCGCGATTATTCAGATATGAAAGGTAAAGTAATGGATGAAC
TGAAAAAGGCATTTCGTCCAGAATTCTTAAACCGTATTGATGAAATTATCGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATTGTAACACTTATGGTGAATCAGTTAGTGAATCGCTTAAAAGAGCAAGAGATTGAATTGCATTTAACAGAAGG
AGCGATTTCAGCCATTGCTGATAAAGGGTTTGACCGAGAGTACGGTGCTCGCCCACTTCGTAGAGCAATTCAGAAACATG
TAGAAGATAGACTATCGGAAGAACTTTTAAAAGGTGCTATTGAGAAAGGACAAAAAGTTATCTTTGATGTTGAAGGAGAA
TCATTTGTCATTCATAGTGCTGAAAAGGTAAAATAA
ATGATGTTTGGAAGATTTACAGAAAGAGCACAAAAAGTATTAGCTTTATCTCAAGAGGAAGCAATTCGCATTGGGCATAA
TAATATTGGAACAGAACATATTTTACTTGGGCTTGTACGCGAAGGGGAAGGAATTGCAGCAAAAGCGTTGATTGCTCTAG
GATTAAGTCCAGAGAAAGTTCAAAAAGAAGTAGAAGCGTTAATTGGACGCGGAACAGAAGCGTCTCAAACGGTACATTAT
ACACCGCGTGCTAAAAAGGTTATTGAGTTGTCTATGGATGAAGCTCGTAAATTAGGTCATTCTTACGTTGGAACAGAACA
TATCTTACTTGGTTTAATCCGTGAAGGTGAAGGTGTAGCGGCACGTGTTTTAAATAACTTAGGTGTTAGCCTAAATAAAG
CAAGACAACAAGTATTGCAACTTCTTGGAAGTAATGAAGCAAGTTCAGGTCACCAAGGTGGTTCTTCAACAAATGCAAAT
ACACCAACACTGGATAGCTTAGCACGTGATTTAACAGTTGTTGCACGTGAAAATCGTTTAGACCCTGTTATTGGGCGTGG
TAAAGAAATTCAACGTGTAATTGAAGTGTTAAGCCGTAGAACAAAAAACAATCCTGTATTAATTGGAGAGCCTGGTGTAG
GTAAAACGGCGATTGCTGAAGGATTAGCACAACAAATCGTAAATAATGAAGTTCCTGAAACTTTAAGAGATAAGCGTGTT
ATGACATTAGATATGGGTACAGTGGTAGCTGGAACGAAATATCGTGGTGAATTTGAAGATCGTTTGAAGAAAGTAATGGA
TGAAATCCGTCAGGCAGGAAATATTATTCTATTTATTGATGAACTTCATACATTAATTGGTGCAGGTGGAGCAGAAGGTG
CTATTGATGCATCGAACATTTTAAAACCTTCTTTAGCTCGCGGGGAGTTACAATGTATTGGGGCGACAACGTTAGATGAA
TATCGCAAATATATTGAAAAAGACGCGGCTTTAGAGAGACGTTTCCAACCAATTCATGTTGATGAGCCAAGTTTAGACGA
ATCAACTCAAATCTTGAAAGGTTTACGTGATCGCTATGAGGCACATCACCGCGTATCTATTACAGATGATGCAATTGATG
CAGCTGTAAAGCTTTCAGATCGTTATATTACAGATCGTTTCTTACCAGATAAAGCAATTGATTTAATTGATGAAGCTGCT
TCTAAGGTTCGCTTACGCTCTTATACAACACCACCAAATTTAAAAGAGCTTGAAGTGAAGCTTGAGGAAATTAGAAAAGA
AAAAGATGCAGCTGTACAAAGTCAAGAATTTGAAAAAGCTGCTTCCTTACGTGATATGGAACAACGCTTGCGTGAGAAGT
TAGAAGATACGAAGCGTCAGTGGAAAGAGAAACAAGGACAAGAAAACTCAGAAGTAACAGTAGAAGATATTGCAAATGTC
GTATCTACGTGGACGCGTATTCCGGTTTCTAAACTTGCACAAACAGAGACTGATAAATTATTAAACTTAGAATCCATTCT
TCACGATCGTGTTATTGGTCAAGATGAAGCGGTAGTAGCTGTAGCGAAAGCCGTTCGTCGTGCTAGAGCAGGATTGAAAG
ATCCGAAACGTCCGATTGGTTCATTTATTTTCTTAGGACCAACAGGTGTAGGTAAGACGGAGCTAGCAAGAGCGTTAGCG
GAATCTATGTTCGGTGATGAGGATGCAATGATTCGCATCGATATGTCTGAGTACATGGAGAAGCATTCTACCTCTCGTTT
AGTTGGATCTCCTCCAGGATATGTTGGATATGAAGAAGGTGGACAATTAACAGAAAAGGTTCGCCGTAAGCCATATTCAG
TTGTCCTATTAGATGAAGTAGAGAAAGCTCATCCTGATGTGTTTAATATTTTACTACAAGTATTAGAAGATGGTCGCTTA
ACGGATTCTAAAGGGCGTACGGTTGATTTCCGTAATACAATTGTTATTATGACATCTAACGTTGGTGCAGACGCGTTAAA
ACGTAATAAACATCTTGGATTTAACGTACAAGATGAGAGCCGCGATTATTCAGATATGAAAGGTAAAGTAATGGATGAAC
TGAAAAAGGCATTTCGTCCAGAATTCTTAAACCGTATTGATGAAATTATCGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATTGTAACACTTATGGTGAATCAGTTAGTGAATCGCTTAAAAGAGCAAGAGATTGAATTGCATTTAACAGAAGG
AGCGATTTCAGCCATTGCTGATAAAGGGTTTGACCGAGAGTACGGTGCTCGCCCACTTCGTAGAGCAATTCAGAAACATG
TAGAAGATAGACTATCGGAAGAACTTTTAAAAGGTGCTATTGAGAAAGGACAAAAAGTTATCTTTGATGTTGAAGGAGAA
TCATTTGTCATTCATAGTGCTGAAAAGGTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
86.173 |
99.877 |
0.861 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.5 |
98.644 |
0.498 |
| clpC | Streptococcus thermophilus LMD-9 |
45.969 |
100 |
0.471 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.476 |
100 |
0.465 |
| clpC | Streptococcus mutans UA159 |
44.762 |
100 |
0.464 |
| clpC | Streptococcus pneumoniae D39 |
46.675 |
98.274 |
0.459 |
| clpC | Streptococcus pneumoniae Rx1 |
46.675 |
98.274 |
0.459 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.375 |
98.644 |
0.457 |
| clpE | Streptococcus mutans UA159 |
53.538 |
80.148 |
0.429 |
| clpE | Streptococcus pneumoniae R6 |
52.396 |
79.778 |
0.418 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.396 |
79.778 |
0.418 |
| clpE | Streptococcus pneumoniae Rx1 |
52.396 |
79.778 |
0.418 |
| clpE | Streptococcus pneumoniae D39 |
52.396 |
79.778 |
0.418 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.893 |
78.175 |
0.406 |