Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT29_RS22470 Genome accession   NZ_CP085398
Coordinates   4386826..4387356 (-) Length   176 a.a.
NCBI ID   WP_048004587.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain F17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4381826..4392356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS22450 (LIT29_22480) - 4382194..4383129 (-) 936 WP_159130302.1 YybS family protein -
  LIT29_RS22455 (LIT29_22485) - 4383322..4385361 (-) 2040 WP_252265524.1 methyl-accepting chemotaxis protein -
  LIT29_RS22460 (LIT29_22490) - 4385502..4386455 (+) 954 WP_252265526.1 MBL fold metallo-hydrolase -
  LIT29_RS22465 (LIT29_22495) rpsR 4386546..4386782 (-) 237 WP_048004588.1 30S ribosomal protein S18 -
  LIT29_RS22470 (LIT29_22500) ssbA 4386826..4387356 (-) 531 WP_048004587.1 single-stranded DNA-binding protein Machinery gene
  LIT29_RS22475 (LIT29_22505) rpsF 4387412..4387699 (-) 288 WP_048004586.1 30S ribosomal protein S6 -
  LIT29_RS22480 (LIT29_22510) ychF 4387910..4389010 (-) 1101 WP_048004585.1 redox-regulated ATPase YchF -
  LIT29_RS22485 (LIT29_22515) - 4389288..4389485 (-) 198 WP_048004584.1 DUF951 domain-containing protein -
  LIT29_RS22490 (LIT29_22520) - 4389500..4390414 (-) 915 WP_148794328.1 mechanosensitive ion channel family protein -
  LIT29_RS22495 (LIT29_22525) yyaC 4390628..4391245 (+) 618 WP_252265528.1 spore protease YyaC -
  LIT29_RS22500 (LIT29_22530) - 4391342..4391518 (+) 177 WP_156183384.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19255.98 Da        Isoelectric Point: 4.7821

>NTDB_id=617702 LIT29_RS22470 WP_048004587.1 4386826..4387356(-) (ssbA) [Rossellomorea marisflavi strain F17]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSANQGGDRGGSPSYSGGGGGYQQGNQGGNSFGQNQNQQQRNNNNNYTRVDEDPF
ANDGQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=617702 LIT29_RS22470 WP_048004587.1 4386826..4387356(-) (ssbA) [Rossellomorea marisflavi strain F17]
ATGATGAACCGAGTTGTATTAGTGGGCCGATTAACCAAAGACCCTGAACTAAAATATACTCCAAGTGGAGTGGCTGTTGC
CTCATTCACCCTGGCAGTGAATCGTTCTTTTACGAATCAATCAGGTGAACGGGAAGCAGATTTTATTAACTGTGTTGTTT
GGCGCCGACCTGCCGAAAACGTAGCGAACTTCCTTAAGAAAGGAAGCCTGGCCGGCGTTGACGGTCGAATCCAGACTCGT
AACTTCGAAGGTCAGGATGGACGACGCGTGTTCATGACGGAAGTCGTGGCCGAAAGCGTTCAATTCCTTGAGCCTCGCAG
TGCGAATCAAGGTGGAGATCGCGGCGGAAGCCCAAGCTATTCTGGCGGCGGTGGTGGTTACCAACAGGGTAACCAAGGTG
GTAACTCATTCGGCCAGAATCAGAATCAACAACAGCGCAACAACAACAATAACTACACTCGCGTAGATGAAGATCCATTC
GCAAATGACGGTCAGCCGATCGACATTTCCGATGACGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.705
  ssb Latilactobacillus sakei subsp. sakei 23K

53.005

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.522

64.205

0.369