Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LIT29_RS19280 Genome accession   NZ_CP085398
Coordinates   3701936..3703252 (-) Length   438 a.a.
NCBI ID   WP_252265189.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain F17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3696936..3708252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS19250 (LIT29_19280) flgL 3697412..3698317 (-) 906 WP_252265183.1 flagellar hook-associated protein FlgL -
  LIT29_RS19255 (LIT29_19285) flgK 3698333..3699910 (-) 1578 WP_252265184.1 flagellar hook-associated protein FlgK -
  LIT29_RS19260 (LIT29_19290) - 3699932..3700429 (-) 498 WP_252265185.1 flagellar protein FlgN -
  LIT29_RS19265 (LIT29_19295) flgM 3700447..3700713 (-) 267 WP_252265186.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIT29_RS19270 (LIT29_19300) - 3700802..3701215 (-) 414 WP_252265187.1 TIGR03826 family flagellar region protein -
  LIT29_RS19275 (LIT29_19305) - 3701275..3701946 (-) 672 WP_252265188.1 ComF family protein -
  LIT29_RS19280 (LIT29_19310) comFA 3701936..3703252 (-) 1317 WP_252265189.1 DEAD/DEAH box helicase Machinery gene
  LIT29_RS19285 (LIT29_19315) - 3703738..3704589 (-) 852 WP_048016132.1 DegV family protein -
  LIT29_RS19290 (LIT29_19320) - 3704741..3705658 (-) 918 WP_048013189.1 DMT family transporter -
  LIT29_RS19295 (LIT29_19325) - 3705841..3707850 (+) 2010 WP_252265190.1 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 48946.37 Da        Isoelectric Point: 8.7333

>NTDB_id=617691 LIT29_RS19280 WP_252265189.1 3701936..3703252(-) (comFA) [Rossellomorea marisflavi strain F17]
MDEILFDGALVHEHYRHGYVSYGPGVQAGICQRCGNGSRGSFGEFECARCGKSCRYCRNCLMMGRVSECTPLLTWNGPPP
RTKEDVFFAWGGTLSPAQQEASTELVTAVKEDRDLLIWAVCGAGKTEVVFEGIYEAISGGKRVCLATPRTDVILELSPRL
KKVFPETDLITLYGGSEERQSYGQIVLTTTHQLFRFKEAFDVMIVDEVDAFPYSFDSSLQFAVEKARKPSSSLIHLTATP
DGATQRECRSGRRHHFRIPARFHRHPIPSPRFAWCGNWQKSLEKGKIPPPLKKWTLQRLHTSTPALIFFPSVAIMNKALP
LFKAIHPLIESVHAQDPKRKEKVMRMRKFEMPILLTTTILERGVTIPGIDVAVLGAEETIFTESALVQISGRVGRSSDHP
GGDIVYFHHGKTGEMIKARAHIHDMNREAGKRGLIDAT

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=617691 LIT29_RS19280 WP_252265189.1 3701936..3703252(-) (comFA) [Rossellomorea marisflavi strain F17]
ATGGATGAGATCCTGTTCGATGGGGCGCTCGTTCATGAGCATTATCGTCATGGATACGTATCATACGGTCCCGGTGTGCA
GGCTGGCATTTGTCAGCGCTGCGGGAACGGTTCGCGCGGAAGTTTTGGTGAGTTTGAATGCGCCCGCTGCGGGAAGTCAT
GCCGCTATTGCCGGAACTGTCTGATGATGGGGAGGGTGTCTGAGTGCACACCCCTCCTGACCTGGAATGGTCCGCCGCCC
CGTACGAAAGAGGATGTCTTCTTTGCCTGGGGAGGGACGCTGTCGCCTGCGCAACAGGAAGCATCCACCGAGCTCGTTAC
GGCGGTGAAAGAGGATCGGGACCTGCTGATATGGGCCGTGTGTGGTGCCGGGAAGACGGAGGTGGTGTTCGAGGGGATCT
ATGAGGCTATCAGTGGCGGTAAGCGCGTCTGCCTTGCAACTCCTAGAACCGATGTGATCCTGGAGCTTTCCCCGCGTTTG
AAGAAGGTGTTTCCTGAAACGGATCTGATCACCCTGTACGGTGGTTCCGAGGAACGCCAGTCATACGGGCAAATCGTGCT
GACCACCACGCATCAGCTGTTTCGGTTCAAGGAGGCATTCGATGTCATGATCGTCGACGAGGTCGATGCCTTTCCCTATT
CCTTCGATTCATCCCTTCAGTTCGCCGTGGAGAAAGCAAGAAAACCGTCCTCCTCCCTCATCCACCTCACGGCAACGCCC
GATGGTGCAACGCAGCGGGAGTGCCGATCAGGACGGCGACACCACTTCAGGATCCCGGCCCGCTTTCATCGTCACCCCAT
TCCTTCTCCGCGCTTTGCCTGGTGTGGTAACTGGCAGAAATCATTGGAAAAAGGAAAGATCCCGCCGCCACTGAAGAAGT
GGACGCTGCAAAGATTGCATACCTCAACCCCAGCCCTCATCTTTTTCCCCAGCGTCGCCATCATGAACAAAGCCCTCCCC
CTGTTCAAAGCCATTCACCCCCTGATCGAGTCCGTCCATGCCCAAGATCCGAAAAGAAAAGAGAAAGTCATGAGGATGCG
TAAGTTCGAGATGCCGATCCTCCTTACCACGACAATCCTGGAACGGGGAGTCACCATTCCTGGCATTGATGTGGCGGTCC
TCGGGGCTGAAGAAACCATCTTCACCGAGAGTGCCCTTGTTCAAATCTCGGGCCGGGTGGGGAGGAGTTCCGATCACCCG
GGCGGTGATATCGTGTACTTTCACCACGGTAAGACCGGCGAGATGATCAAAGCCCGCGCCCATATCCATGATATGAACAG
GGAGGCCGGGAAGAGGGGGCTCATCGATGCCACGTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-241)

Helicase conserved C-terminal domain (Helicase_C)

(301-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

48.961

98.858

0.484
  comFA/cflA Streptococcus mitis SK321

38.929

93.836

0.365
  comFA/cflA Streptococcus mitis NCTC 12261

38.821

92.922

0.361