Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT38_RS26305 Genome accession   NZ_CP085394
Coordinates   5280175..5280684 (-) Length   169 a.a.
NCBI ID   WP_009332473.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5275175..5285684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS26285 (LIT38_26315) rplI 5276251..5276697 (-) 447 WP_243506392.1 50S ribosomal protein L9 -
  LIT38_RS26290 (LIT38_26320) - 5276694..5278667 (-) 1974 WP_243506393.1 DHH family phosphoesterase -
  LIT38_RS26295 (LIT38_26325) - 5278699..5279634 (-) 936 WP_243506394.1 YybS family protein -
  LIT38_RS26300 (LIT38_26330) rpsR 5279878..5280117 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  LIT38_RS26305 (LIT38_26335) ssbA 5280175..5280684 (-) 510 WP_009332473.1 single-stranded DNA-binding protein Machinery gene
  LIT38_RS26310 (LIT38_26340) rpsF 5280722..5281009 (-) 288 WP_009332474.1 30S ribosomal protein S6 -
  LIT38_RS26315 (LIT38_26345) ychF 5281391..5282491 (-) 1101 WP_252216676.1 redox-regulated ATPase YchF -
  LIT38_RS26320 (LIT38_26350) - 5282715..5284721 (-) 2007 WP_252216678.1 molybdopterin-dependent oxidoreductase -
  LIT38_RS26325 (LIT38_26355) - 5284749..5284946 (-) 198 WP_009332477.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18776.51 Da        Isoelectric Point: 4.7827

>NTDB_id=617538 LIT38_RS26305 WP_009332473.1 5280175..5280684(-) (ssbA) [Bacillus sp. CMF12]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGGYTRVDQDPFANDGQI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=617538 LIT38_RS26305 WP_009332473.1 5280175..5280684(-) (ssbA) [Bacillus sp. CMF12]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTACGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTACTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAACTTCCTTAAAAAAGGCAGTCTTGCAGGTGTAGATGGCCGGATTCAGTCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGTGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGCGGCAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCAATC
AGAATCAACGCCAGGATAATCGTAATCAGGGCGGCTATACTCGCGTGGATCAGGACCCATTTGCAAATGACGGCCAAATC
GACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.225

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

53.514

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.722

0.402