Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LIT38_RS24280 Genome accession   NZ_CP085394
Coordinates   4818308..4818988 (-) Length   226 a.a.
NCBI ID   WP_221879617.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4813308..4823988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS26670 - 4814284..4814616 (-) 333 WP_353737005.1 phosphoribosyltransferase family protein -
  LIT38_RS26675 - 4814791..4814982 (-) 192 Protein_4740 double zinc ribbon domain-containing protein -
  LIT38_RS24265 (LIT38_24300) - 4814978..4816450 (-) 1473 WP_252216198.1 DEAD/DEAH box helicase -
  LIT38_RS24270 (LIT38_24305) - 4816682..4817521 (-) 840 WP_243505970.1 DegV family protein -
  LIT38_RS24275 (LIT38_24310) - 4817743..4818021 (+) 279 WP_243505971.1 hypothetical protein -
  LIT38_RS24280 (LIT38_24315) degU 4818308..4818988 (-) 681 WP_221879617.1 response regulator transcription factor Regulator
  LIT38_RS24285 (LIT38_24320) degS 4819045..4820184 (-) 1140 WP_221879618.1 sensor histidine kinase Regulator
  LIT38_RS24290 (LIT38_24325) - 4820598..4821230 (+) 633 WP_243505972.1 YigZ family protein -
  LIT38_RS24295 (LIT38_24330) - 4821308..4822447 (+) 1140 WP_252216200.1 LCP family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25225.67 Da        Isoelectric Point: 5.3665

>NTDB_id=617531 LIT38_RS24280 WP_221879617.1 4818308..4818988(-) (degU) [Bacillus sp. CMF12]
MNTKIVIIDDHQLFREGVKRILDFEKSFNVVAEGDDGSEAMALVEENDPDVIIMDINMPNTNGVEATRQLINKYPESKVI
ILSIHDDENYVTHALKTGASGYLLKEMDADALVEAVKVVADGGSYLHPKVTHNLVNEYRRLAAEGTGTTSYSQVEIRRPL
HLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=617531 LIT38_RS24280 WP_221879617.1 4818308..4818988(-) (degU) [Bacillus sp. CMF12]
TTGAATACAAAGATCGTCATAATTGATGACCATCAATTATTCAGAGAAGGGGTAAAACGCATTTTAGATTTCGAAAAGAG
CTTTAATGTAGTGGCAGAAGGCGATGATGGCAGTGAAGCCATGGCTCTTGTGGAAGAGAATGATCCAGATGTAATCATCA
TGGACATCAATATGCCGAATACAAACGGTGTGGAAGCGACCCGCCAGCTGATTAATAAATATCCTGAATCCAAGGTGATC
ATTCTTTCCATCCATGATGATGAGAATTATGTAACGCACGCACTTAAGACAGGAGCAAGCGGATACCTTTTAAAAGAAAT
GGATGCAGATGCATTAGTCGAAGCTGTAAAGGTTGTCGCTGATGGAGGATCTTATTTACATCCGAAGGTGACACACAACC
TGGTAAATGAATACCGCAGACTAGCTGCAGAAGGTACTGGAACCACATCTTATTCACAGGTGGAAATCCGCCGTCCTCTT
CACTTGCTGACACGCCGTGAATGCGAAGTGCTTCAGCTCCTTGCTGATGGCAAAAGTAACCGCGGAATTGGGGAAGCTTT
ATACATAAGTGAAAAAACAGTAAAGAACCACGTGAGCAATATCCTGCAAAAAATGAATGTGAATGACCGTACTCAGGCAG
TCGTTGTAGCGATTAAAAATGGCTGGGTTGAGGTGCGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-217)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

83.036

99.115

0.823
  vraR Staphylococcus aureus N315

36.889

99.558

0.367