Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   LIT38_RS24285 Genome accession   NZ_CP085394
Coordinates   4819045..4820184 (-) Length   379 a.a.
NCBI ID   WP_221879618.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4814045..4825184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS26670 - 4814284..4814616 (-) 333 WP_353737005.1 phosphoribosyltransferase family protein -
  LIT38_RS26675 - 4814791..4814982 (-) 192 Protein_4740 double zinc ribbon domain-containing protein -
  LIT38_RS24265 (LIT38_24300) - 4814978..4816450 (-) 1473 WP_252216198.1 DEAD/DEAH box helicase -
  LIT38_RS24270 (LIT38_24305) - 4816682..4817521 (-) 840 WP_243505970.1 DegV family protein -
  LIT38_RS24275 (LIT38_24310) - 4817743..4818021 (+) 279 WP_243505971.1 hypothetical protein -
  LIT38_RS24280 (LIT38_24315) degU 4818308..4818988 (-) 681 WP_221879617.1 response regulator transcription factor Regulator
  LIT38_RS24285 (LIT38_24320) degS 4819045..4820184 (-) 1140 WP_221879618.1 sensor histidine kinase Regulator
  LIT38_RS24290 (LIT38_24325) - 4820598..4821230 (+) 633 WP_243505972.1 YigZ family protein -
  LIT38_RS24295 (LIT38_24330) - 4821308..4822447 (+) 1140 WP_252216200.1 LCP family protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 44017.98 Da        Isoelectric Point: 6.8620

>NTDB_id=617532 LIT38_RS24285 WP_221879618.1 4819045..4820184(-) (degS) [Bacillus sp. CMF12]
MSIKKFDSKTLDLILEKMVQTVGTSKDEIFRIGEQCRKDHKTLTDELMEVKQMVLKVIEEGDKLEVQTRFARKRLSEVSM
HFKDYSESEVREAYEKAHQLQMDLSMNRQLEKQLRDRRDDIERRLIGVNDTIDRAEVLISQITVVMNYLTSDLKQMGEII
EDAKLKQDFGLKIIEAQEEERKRVSREIHDGPAQMMANVMMRSDLIERVYKERGADEAITEIKDLKKMVRNALYEVRRII
YDLRPMALDDLGLIPTLKKYLTTIEEYHRSTKIYFANVGEERRLPPQYEVALFRLIQESVTNALKHAEAKEIHVKIEINS
TRVAVVIKDDGKGFNLREKRPGSFGIMGMGERLELLDGQMSIDSKIGKGTIVIIQVPLN

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=617532 LIT38_RS24285 WP_221879618.1 4819045..4820184(-) (degS) [Bacillus sp. CMF12]
ATGAGTATTAAGAAATTCGATTCCAAGACTCTGGATCTTATTCTTGAAAAAATGGTTCAAACAGTAGGCACCAGTAAAGA
TGAAATTTTCCGTATAGGTGAACAATGCCGTAAAGACCATAAGACTTTAACGGATGAACTTATGGAAGTTAAACAAATGG
TTCTTAAGGTAATTGAAGAAGGGGATAAGCTGGAGGTGCAAACCCGGTTTGCAAGAAAGCGCCTTTCTGAAGTAAGCATG
CATTTTAAGGATTATTCAGAGTCTGAAGTGCGTGAAGCATATGAGAAGGCCCATCAGCTTCAAATGGATTTATCCATGAA
TCGCCAGCTTGAAAAACAGCTGAGGGATCGCCGTGATGATATTGAAAGAAGGCTTATAGGTGTTAACGACACTATTGATA
GAGCTGAAGTCCTTATTTCTCAAATCACGGTCGTGATGAATTATCTGACAAGTGACTTAAAACAAATGGGAGAAATCATT
GAAGACGCGAAGCTCAAACAGGATTTTGGTCTGAAGATCATCGAAGCACAGGAAGAAGAGCGGAAAAGAGTGTCCCGCGA
GATCCATGACGGACCGGCCCAGATGATGGCGAATGTCATGATGAGATCCGACTTAATTGAACGGGTATACAAAGAGCGCG
GTGCTGATGAAGCCATTACTGAAATAAAAGACCTGAAAAAAATGGTCCGCAATGCTTTATATGAAGTTCGAAGGATTATT
TATGATTTGCGTCCAATGGCTCTTGATGATTTGGGTTTAATACCTACCCTCAAAAAATACTTAACAACGATCGAAGAGTA
TCACAGGAGTACCAAGATATACTTCGCGAATGTTGGCGAAGAAAGGCGATTGCCGCCACAATATGAAGTCGCATTGTTCC
GCCTGATTCAGGAATCTGTGACAAATGCTCTCAAGCATGCAGAAGCTAAAGAAATCCATGTGAAAATAGAAATAAACAGC
ACTAGGGTAGCAGTAGTCATCAAAGACGATGGGAAAGGCTTCAATCTTCGTGAGAAGCGTCCGGGCTCTTTTGGAATTAT
GGGAATGGGTGAAAGGCTTGAACTTTTGGATGGCCAGATGTCCATAGATTCTAAAATAGGCAAAGGAACCATTGTCATTA
TCCAAGTGCCATTGAATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(289-378)

Histidine kinase (HisKA_3)

(180-248)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

63.802

100

0.646