Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LIT27_RS30375 Genome accession   NZ_CP085392
Coordinates   4988521..4988697 (-) Length   58 a.a.
NCBI ID   WP_285885297.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain CK22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4983521..4993697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS25685 (LIT27_25735) - 4984318..4984797 (-) 480 WP_252245544.1 flagellar protein FlgN -
  LIT27_RS25690 (LIT27_25740) flgM 4984813..4985079 (-) 267 WP_019380809.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIT27_RS25695 (LIT27_25745) - 4985223..4985654 (-) 432 WP_217026390.1 TIGR03826 family flagellar region protein -
  LIT27_RS25700 (LIT27_25750) - 4985725..4988310 (-) 2586 WP_252245545.1 EAL domain-containing protein -
  LIT27_RS30375 comFC 4988521..4988697 (-) 177 WP_285885297.1 phosphoribosyltransferase family protein Machinery gene
  LIT27_RS25705 (LIT27_25755) - 4988708..4989211 (-) 504 WP_353739178.1 double zinc ribbon domain-containing protein -
  LIT27_RS25710 (LIT27_25760) - 4989207..4990676 (-) 1470 WP_026041628.1 DEAD/DEAH box helicase -
  LIT27_RS25715 (LIT27_25765) - 4990913..4991752 (-) 840 WP_019380804.1 DegV family protein -
  LIT27_RS25720 (LIT27_25770) - 4991975..4992253 (+) 279 WP_019380802.1 hypothetical protein -
  LIT27_RS25725 (LIT27_25775) - 4992462..4993142 (-) 681 WP_019380801.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6324.37 Da        Isoelectric Point: 10.1647

>NTDB_id=617484 LIT27_RS30375 WP_285885297.1 4988521..4988697(-) (comFC) [Cytobacillus oceanisediminis strain CK22]
MDRIHSHQVFQLQNLNIKNKKIILIDDIYTTGSTLYHAAKVLKAGGAASVCSVTLARG

Nucleotide


Download         Length: 177 bp        

>NTDB_id=617484 LIT27_RS30375 WP_285885297.1 4988521..4988697(-) (comFC) [Cytobacillus oceanisediminis strain CK22]
ATGGACCGAATTCATTCGCACCAGGTCTTCCAGCTGCAAAATCTCAATATCAAGAATAAAAAAATTATCCTAATTGACGA
TATCTATACTACTGGCTCAACTCTATATCATGCAGCGAAAGTTCTTAAAGCAGGGGGTGCTGCTTCAGTCTGCTCGGTTA
CATTAGCAAGAGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(15-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

49.123

98.276

0.483
  comFC Latilactobacillus sakei subsp. sakei 23K

45.763

100

0.466
  comFC Lactococcus lactis subsp. cremoris KW2

43.636

94.828

0.414
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

37.5

96.552

0.362
  comFC/cflB Streptococcus mitis SK321

55.263

65.517

0.362