Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT27_RS27990 Genome accession   NZ_CP085392
Coordinates   5491640..5492149 (-) Length   169 a.a.
NCBI ID   WP_009332473.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain CK22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5486640..5497149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS27970 (LIT27_28030) rplI 5487716..5488162 (-) 447 WP_009332458.1 50S ribosomal protein L9 -
  LIT27_RS27975 (LIT27_28035) - 5488159..5490132 (-) 1974 WP_009332459.1 DHH family phosphoesterase -
  LIT27_RS27980 (LIT27_28040) - 5490164..5491099 (-) 936 WP_009332460.1 YybS family protein -
  LIT27_RS27985 (LIT27_28045) rpsR 5491343..5491582 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  LIT27_RS27990 (LIT27_28050) ssbA 5491640..5492149 (-) 510 WP_009332473.1 single-stranded DNA-binding protein Machinery gene
  LIT27_RS27995 (LIT27_28055) rpsF 5492187..5492474 (-) 288 WP_009332474.1 30S ribosomal protein S6 -
  LIT27_RS28000 (LIT27_28060) ychF 5492764..5493864 (-) 1101 WP_009332475.1 redox-regulated ATPase YchF -
  LIT27_RS28005 (LIT27_28065) - 5494244..5496247 (-) 2004 WP_251264370.1 molybdopterin-dependent oxidoreductase -
  LIT27_RS28010 (LIT27_28070) - 5496275..5496472 (-) 198 WP_009332477.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18776.51 Da        Isoelectric Point: 4.7827

>NTDB_id=617483 LIT27_RS27990 WP_009332473.1 5491640..5492149(-) (ssbA) [Cytobacillus oceanisediminis strain CK22]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGGYTRVDQDPFANDGQI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=617483 LIT27_RS27990 WP_009332473.1 5491640..5492149(-) (ssbA) [Cytobacillus oceanisediminis strain CK22]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTACTTTTACGAATCAGCAAGGTGAACGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAACTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAGTCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGTGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGAGGCAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCAATC
AGAATCAACGCCAGGATAATCGTAATCAGGGCGGCTATACTCGCGTGGATCAGGACCCATTCGCAAATGACGGCCAAATC
GACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.225

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

53.514

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.722

0.402