Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   NUW85_RS11995 Genome accession   NZ_CP102603
Coordinates   2489089..2490285 (+) Length   398 a.a.
NCBI ID   WP_139885508.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2484089..2495285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS11975 (NUW85_11980) walK 2484184..2486019 (+) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  NUW85_RS11980 (NUW85_11985) yycH 2486009..2487367 (+) 1359 WP_004393107.1 two-component system activity regulator YycH -
  NUW85_RS11985 (NUW85_11990) yycI 2487354..2488193 (+) 840 WP_004393108.1 two-component system regulatory protein YycI -
  NUW85_RS11990 (NUW85_11995) vicX 2488208..2489002 (+) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  NUW85_RS11995 (NUW85_12000) htrA 2489089..2490285 (+) 1197 WP_139885508.1 S1C family serine protease Regulator
  NUW85_RS12000 (NUW85_12005) - 2490752..2490964 (+) 213 WP_057080362.1 winged helix-turn-helix domain-containing protein -
  NUW85_RS12005 (NUW85_12010) - 2490961..2492379 (+) 1419 WP_139885507.1 HAMP domain-containing sensor histidine kinase -
  NUW85_RS12010 (NUW85_12015) - 2492611..2493618 (+) 1008 WP_139885506.1 ThiF family adenylyltransferase -
  NUW85_RS12015 (NUW85_12020) - 2493615..2494937 (+) 1323 WP_139885505.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42634.49 Da        Isoelectric Point: 8.2633

>NTDB_id=617457 NUW85_RS11995 WP_139885508.1 2489089..2490285(+) (htrA) [Bacillus amyloliquefaciens strain MBLB0692]
MDYNRDDEQYASEQPRRSKRGYFLSSLIGVIVGAALMAFLMPYWTGGDHGDSSKSTSRRLGSEQVKTVNVNVNDAVTNMV
SRVSDSVVGVLNIQKTDIWGEGGEAGSGSGVIYKKNGNTSYIVTNHHVIEGATEIEISLKDGSRVPAELIGSDRLMDLAV
LKVKSDKIKSAAQFGNSDQVKVGEPVIAIGNPLGLEFAGSVTQGIISGTERAVPVDSNGDGHPDWNAEVLQTDAAINPGN
SGGALMDISGKVVGINSMKIAESAVEGIGLSIPSKLVIPVIQDLEKYGEVRRPFLGIEMKSLTDIASYHWSQTLKLPKGV
KTGAVIMGVDAFSPAGKAGLKKLDVITGFDGPKVNDVVDLRERLYRKKIGDRVNITFYRSGKKKTAEVKLTEADRLQK

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=617457 NUW85_RS11995 WP_139885508.1 2489089..2490285(+) (htrA) [Bacillus amyloliquefaciens strain MBLB0692]
GTGGATTATAATCGCGATGATGAACAGTACGCCTCCGAACAGCCCCGCCGCAGCAAGAGAGGATACTTTCTATCAAGTCT
GATCGGCGTCATCGTCGGGGCCGCGCTCATGGCTTTCCTGATGCCGTACTGGACAGGCGGAGACCATGGAGACAGCAGCA
AAAGCACCAGCCGGCGTCTCGGCAGCGAACAGGTGAAAACAGTCAACGTAAATGTCAATGACGCTGTCACGAATATGGTC
AGCCGTGTATCGGATTCGGTAGTCGGCGTTCTCAATATCCAAAAGACTGATATTTGGGGAGAGGGCGGCGAAGCGGGAAG
CGGGTCGGGCGTCATTTACAAAAAGAACGGAAACACTTCTTATATCGTAACCAATCACCATGTCATTGAAGGTGCGACTG
AGATTGAGATCAGCCTGAAGGATGGTTCGCGCGTGCCTGCTGAGCTGATCGGGAGCGACCGTCTGATGGATCTCGCGGTA
CTGAAGGTGAAGTCTGATAAAATCAAATCGGCCGCCCAGTTCGGCAATTCTGATCAAGTCAAAGTCGGAGAACCGGTCAT
TGCGATCGGAAATCCGCTCGGACTTGAATTTGCGGGATCAGTGACACAGGGGATCATTTCAGGCACGGAAAGAGCGGTGC
CCGTTGACTCAAACGGCGACGGACATCCGGATTGGAATGCGGAAGTGCTGCAGACCGACGCTGCGATTAATCCCGGCAAC
AGCGGCGGCGCTTTGATGGATATTTCGGGTAAGGTGGTCGGCATCAACTCAATGAAGATCGCTGAATCCGCCGTTGAAGG
AATCGGCCTGTCCATCCCGTCAAAGCTTGTCATTCCCGTTATTCAGGATTTAGAAAAATACGGAGAAGTCCGACGGCCTT
TCCTCGGTATTGAGATGAAATCCTTAACGGATATTGCGAGCTACCATTGGAGCCAGACGCTGAAACTTCCGAAAGGCGTT
AAAACCGGGGCGGTCATTATGGGTGTCGACGCGTTTTCACCGGCCGGAAAAGCGGGTTTGAAAAAGCTCGACGTGATTAC
CGGGTTCGACGGACCTAAGGTCAATGACGTTGTGGATCTCCGTGAGCGCCTGTATCGCAAAAAGATCGGCGACCGTGTGA
ACATCACGTTCTACCGTTCGGGAAAGAAAAAAACAGCGGAAGTCAAACTGACAGAAGCGGATCGATTACAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.687

99.497

0.435

  htrA Streptococcus mitis NCTC 12261

41.192

96.985

0.4

  htrA Streptococcus gordonii str. Challis substr. CH1

40.153

98.241

0.394