Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   LIS79_RS15050 Genome accession   NZ_CP085389
Coordinates   2873894..2874034 (-) Length   46 a.a.
NCBI ID   WP_003213123.1    Uniprot ID   A0A5K1N966
Organism   Bacillus altitudinis strain CMF5     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2868894..2879034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS15025 (LIS79_15030) - 2869173..2869562 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  LIS79_RS15030 (LIS79_15035) comA 2869586..2870227 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  LIS79_RS15035 (LIS79_15040) comP 2870308..2872620 (-) 2313 WP_035701206.1 ATP-binding protein Regulator
  LIS79_RS15040 (LIS79_15045) comX 2872661..2872831 (-) 171 WP_074041927.1 competence pheromone ComX -
  LIS79_RS15045 (LIS79_15050) - 2872828..2873742 (-) 915 WP_060832601.1 polyprenyl synthetase family protein -
  LIS79_RS15050 (LIS79_15055) degQ 2873894..2874034 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  LIS79_RS15055 (LIS79_15060) - 2874540..2874893 (+) 354 WP_019744042.1 hypothetical protein -
  LIS79_RS15060 (LIS79_15065) - 2874930..2876156 (-) 1227 WP_035701209.1 HDOD domain-containing protein -
  LIS79_RS15065 (LIS79_15070) - 2876297..2877766 (-) 1470 WP_007500472.1 nicotinate phosphoribosyltransferase -
  LIS79_RS15070 (LIS79_15075) - 2877784..2878335 (-) 552 WP_144683732.1 isochorismatase family cysteine hydrolase -
  LIS79_RS15075 (LIS79_15080) - 2878396..2878803 (-) 408 WP_056702629.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5677.42 Da        Isoelectric Point: 4.6828

>NTDB_id=617365 LIS79_RS15050 WP_003213123.1 2873894..2874034(-) (degQ) [Bacillus altitudinis strain CMF5]
MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEYVKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=617365 LIS79_RS15050 WP_003213123.1 2873894..2874034(-) (degQ) [Bacillus altitudinis strain CMF5]
ATGGAAAAGTATGAAATCGAAGAACTTAAACAATTATTATGGAAACTTGAAAACGAAATTAGAGAAACAACGGCTTCTCT
TCATAACATTAACAAAAGCATTGATCAATACGACAAATATGAATATGTGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N966

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.696