Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LIS79_RS15030 Genome accession   NZ_CP085389
Coordinates   2869586..2870227 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CMF5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2864586..2875227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS14995 (LIS79_15000) - 2865714..2866145 (+) 432 WP_252224483.1 Na(+)/H(+) antiporter subunit B -
  LIS79_RS15000 (LIS79_15005) - 2866145..2866486 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  LIS79_RS15005 (LIS79_15010) - 2866479..2867957 (+) 1479 WP_249670092.1 Na+/H+ antiporter subunit D -
  LIS79_RS15010 (LIS79_15015) - 2867964..2868443 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  LIS79_RS15015 (LIS79_15020) - 2868443..2868724 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  LIS79_RS15020 (LIS79_15025) mnhG 2868708..2869082 (+) 375 WP_008345852.1 monovalent cation/H(+) antiporter subunit G -
  LIS79_RS15025 (LIS79_15030) - 2869173..2869562 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  LIS79_RS15030 (LIS79_15035) comA 2869586..2870227 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  LIS79_RS15035 (LIS79_15040) comP 2870308..2872620 (-) 2313 WP_035701206.1 ATP-binding protein Regulator
  LIS79_RS15040 (LIS79_15045) comX 2872661..2872831 (-) 171 WP_074041927.1 competence pheromone ComX -
  LIS79_RS15045 (LIS79_15050) - 2872828..2873742 (-) 915 WP_060832601.1 polyprenyl synthetase family protein -
  LIS79_RS15050 (LIS79_15055) degQ 2873894..2874034 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  LIS79_RS15055 (LIS79_15060) - 2874540..2874893 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=617363 LIS79_RS15030 WP_007500477.1 2869586..2870227(-) (comA) [Bacillus altitudinis strain CMF5]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=617363 LIS79_RS15030 WP_007500477.1 2869586..2870227(-) (comA) [Bacillus altitudinis strain CMF5]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718