Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   LIS79_RS15035 Genome accession   NZ_CP085389
Coordinates   2870308..2872620 (-) Length   770 a.a.
NCBI ID   WP_035701206.1    Uniprot ID   A0AB39J089
Organism   Bacillus altitudinis strain CMF5     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 2865308..2877620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS14995 (LIS79_15000) - 2865714..2866145 (+) 432 WP_252224483.1 Na(+)/H(+) antiporter subunit B -
  LIS79_RS15000 (LIS79_15005) - 2866145..2866486 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  LIS79_RS15005 (LIS79_15010) - 2866479..2867957 (+) 1479 WP_249670092.1 Na+/H+ antiporter subunit D -
  LIS79_RS15010 (LIS79_15015) - 2867964..2868443 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  LIS79_RS15015 (LIS79_15020) - 2868443..2868724 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  LIS79_RS15020 (LIS79_15025) mnhG 2868708..2869082 (+) 375 WP_008345852.1 monovalent cation/H(+) antiporter subunit G -
  LIS79_RS15025 (LIS79_15030) - 2869173..2869562 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  LIS79_RS15030 (LIS79_15035) comA 2869586..2870227 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  LIS79_RS15035 (LIS79_15040) comP 2870308..2872620 (-) 2313 WP_035701206.1 ATP-binding protein Regulator
  LIS79_RS15040 (LIS79_15045) comX 2872661..2872831 (-) 171 WP_074041927.1 competence pheromone ComX -
  LIS79_RS15045 (LIS79_15050) - 2872828..2873742 (-) 915 WP_060832601.1 polyprenyl synthetase family protein -
  LIS79_RS15050 (LIS79_15055) degQ 2873894..2874034 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  LIS79_RS15055 (LIS79_15060) - 2874540..2874893 (+) 354 WP_019744042.1 hypothetical protein -
  LIS79_RS15060 (LIS79_15065) - 2874930..2876156 (-) 1227 WP_035701209.1 HDOD domain-containing protein -

Sequence


Protein


Download         Length: 770 a.a.        Molecular weight: 89674.24 Da        Isoelectric Point: 7.1527

>NTDB_id=617364 LIS79_RS15035 WP_035701206.1 2870308..2872620(-) (comP) [Bacillus altitudinis strain CMF5]
MKITYTKLSAFFVFLSFLFVIYVSYIYVFDIFNGARVEENKNGQAEVVKVEYLSLAYTSGLEEGDIILKINGESANNKDH
LINGELRNVQRIDIQRGNQMITLKNKTLIGQESLFVYIIPLILYSICLFCIFFIIRINKEIQRKSAFLLVLFLLTICIGY
LSAGTSGIGDRFSHYVITFCLSSVFIFYIHFIYQYFKEFDLHITTRKTIYILYSLPITNLVIELFVPIDSAIARYMPSLN
LLFFFASIIMSFKVIINGMQKYKETEQGSVLKFFVMINIIAFCPFIFLFAIPYVLFRIYVVDPFFLTSFVLLIPFSLVYQ
FMTNKLYNMDFLISRLKYYGFIAITPTILVVVTFYILQKPEDLKYTLKLAFITYTLMLAVFYFKEILDFRFRLKRFSEKY
NYQDSVFKFTQLIREASSLHQVLYHLKYTILEVLVVNKAFVLEVKANGEMIEIDESTNDSKLWKEYVDQFQDILGEVGKI
IELDKGFMMKIGERGGHSFMICCLSNIQTPKLTRDEISWLKTLAFYTSVSLENVVKIEELMEHLEDLKQREANPAWLKKV
MFAMEEKQRSDLARDLHDSVLQDLISLKRQSEMFLTNFQNNQCPTSIENSLISWNEQMSKVIQTTRETCHELRPQLLYDL
GLVKAISKLTSQIQEEAPFHIRLNTTRFDKELDIDIDSQLNIYRIVQELLSNALKHSKASQVLVMLICIKDQVVLHYEDD
GVGFDASQLDQHTMSMGLSGIRERVKALNGKLQIHTAPEKGLKVKIEMEL

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=617364 LIS79_RS15035 WP_035701206.1 2870308..2872620(-) (comP) [Bacillus altitudinis strain CMF5]
ATGAAGATAACTTATACGAAACTATCTGCTTTTTTTGTTTTTCTGTCTTTTTTATTTGTGATCTATGTTTCATATATTTA
TGTATTTGATATTTTTAATGGAGCACGTGTTGAGGAGAACAAGAATGGTCAAGCAGAAGTTGTCAAAGTCGAATATCTTT
CTTTAGCCTACACATCAGGATTAGAAGAAGGAGATATTATACTTAAAATCAATGGAGAATCTGCTAACAACAAAGATCAT
TTGATCAATGGTGAGCTTAGGAATGTGCAAAGAATTGATATTCAAAGAGGCAACCAAATGATCACCCTAAAAAATAAGAC
ATTGATTGGTCAAGAAAGTTTATTTGTCTATATAATTCCTCTCATCCTGTATTCAATATGTTTATTTTGTATCTTCTTTA
TCATTCGTATTAACAAAGAGATCCAACGAAAATCAGCATTTCTTTTAGTTTTATTTTTATTAACGATTTGTATCGGATAT
CTTAGTGCAGGTACTTCGGGTATTGGTGATAGATTTAGCCATTATGTCATCACATTTTGTTTATCAAGTGTATTTATCTT
TTATATTCATTTCATTTATCAATATTTCAAAGAGTTTGACCTGCATATAACGACTCGAAAAACAATTTATATTTTATATA
GTCTTCCTATAACTAATCTAGTAATAGAGCTGTTTGTTCCAATTGATTCGGCGATAGCCAGATACATGCCGAGTTTAAAT
CTTTTATTCTTTTTTGCTTCTATTATCATGTCATTCAAAGTCATTATTAATGGAATGCAGAAATATAAAGAGACAGAGCA
GGGGTCTGTTTTAAAGTTTTTTGTCATGATTAATATCATAGCATTTTGTCCGTTTATATTTTTATTTGCAATTCCATATG
TTTTGTTTCGTATTTATGTTGTAGATCCCTTTTTCTTAACTTCTTTTGTATTGCTCATTCCTTTTTCACTCGTGTATCAA
TTCATGACGAACAAACTTTACAATATGGATTTCTTGATTAGTAGACTTAAATACTATGGATTTATTGCCATTACACCGAC
CATTTTAGTTGTTGTCACGTTTTATATTCTGCAAAAACCAGAAGATTTAAAGTACACACTGAAGCTCGCATTCATCACAT
ATACACTCATGTTGGCTGTTTTCTATTTCAAAGAAATTTTAGATTTCCGTTTTCGTTTGAAACGTTTTTCAGAGAAGTAT
AATTACCAAGACAGCGTGTTTAAATTTACGCAGCTTATTCGTGAGGCGTCATCACTTCATCAAGTACTGTATCATTTGAA
ATACACCATTTTAGAAGTGCTCGTTGTGAATAAAGCCTTTGTGCTAGAGGTGAAGGCTAATGGAGAAATGATTGAAATTG
ATGAATCAACAAATGATAGTAAGTTATGGAAAGAATACGTGGATCAATTTCAAGATATTTTAGGTGAAGTTGGGAAAATC
ATCGAGCTTGATAAAGGGTTTATGATGAAAATTGGAGAGCGGGGCGGTCACTCGTTTATGATTTGCTGCTTATCCAATAT
ACAGACGCCGAAATTGACCCGCGATGAAATTTCATGGCTGAAAACATTGGCATTTTACACAAGTGTCAGTTTAGAAAATG
TCGTCAAGATTGAAGAATTGATGGAGCATCTTGAGGATTTGAAACAGCGGGAAGCCAATCCCGCCTGGCTGAAGAAAGTC
ATGTTCGCCATGGAAGAGAAGCAGCGTTCAGATTTAGCGAGGGATCTTCATGATTCTGTGCTGCAGGATTTGATTTCACT
GAAGAGACAGTCCGAGATGTTCTTAACCAATTTCCAAAACAACCAATGCCCAACATCTATTGAAAATTCATTGATCTCAT
GGAATGAACAAATGTCTAAGGTGATTCAAACCACGAGAGAAACATGTCATGAACTTCGGCCACAGCTCCTCTATGATTTG
GGGTTAGTGAAGGCAATTTCGAAGCTGACTTCGCAAATTCAAGAGGAAGCGCCATTTCATATTAGGCTGAATACAACCCG
CTTTGATAAAGAACTGGACATTGATATTGACTCACAGCTGAATATTTACCGGATTGTGCAGGAGCTGTTATCCAATGCGT
TGAAGCATTCTAAGGCCAGCCAAGTCTTAGTGATGCTCATTTGTATTAAAGATCAAGTTGTTCTCCATTATGAGGACGAT
GGAGTCGGATTTGATGCAAGCCAGCTTGATCAGCACACGATGAGCATGGGTCTTTCTGGCATAAGGGAACGAGTCAAAGC
TCTAAATGGAAAGCTTCAAATTCACACAGCACCTGAAAAAGGGCTCAAGGTGAAAATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

48.645

100

0.49