Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIS79_RS00255 Genome accession   NZ_CP085389
Coordinates   47218..47508 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CMF5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42218..52508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS00215 (LIS79_00215) - 42251..42580 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  LIS79_RS00220 (LIS79_00220) - 42593..43033 (+) 441 WP_008341898.1 YaaR family protein -
  LIS79_RS00225 (LIS79_00225) holB 43045..44034 (+) 990 WP_017359329.1 DNA polymerase III subunit delta' -
  LIS79_RS00230 (LIS79_00230) - 44037..44864 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  LIS79_RS00235 (LIS79_00235) yabA 44879..45232 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  LIS79_RS00240 (LIS79_00240) - 45288..46031 (+) 744 WP_046527641.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LIS79_RS00245 (LIS79_00245) - 46018..46317 (+) 300 WP_017359327.1 GIY-YIG nuclease family protein -
  LIS79_RS00250 (LIS79_00250) rsmI 46292..47173 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LIS79_RS00255 (LIS79_00255) abrB 47218..47508 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIS79_RS00260 (LIS79_00260) metG 48028..50028 (+) 2001 WP_035704074.1 methionine--tRNA ligase -
  LIS79_RS00265 (LIS79_00265) - 50110..50877 (+) 768 WP_017359325.1 TatD family hydrolase -
  LIS79_RS00270 (LIS79_00270) - 51122..52324 (+) 1203 WP_007496219.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=617319 LIS79_RS00255 WP_087975202.1 47218..47508(-) (abrB) [Bacillus altitudinis strain CMF5]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=617319 LIS79_RS00255 WP_087975202.1 47218..47508(-) (abrB) [Bacillus altitudinis strain CMF5]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGACGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938