Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   MOP79_RS07815 Genome accession   NZ_CP102583
Coordinates   1524400..1524894 (+) Length   164 a.a.
NCBI ID   WP_223842291.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain D39Mega17545     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1519400..1529894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOP79_RS07790 - 1519896..1521026 (+) 1131 WP_000885102.1 N-acetyldiaminopimelate deacetylase -
  MOP79_RS07795 - 1521038..1521577 (+) 540 WP_000834308.1 5-formyltetrahydrofolate cyclo-ligase -
  MOP79_RS07800 - 1521561..1522238 (+) 678 WP_000658498.1 rhomboid family intramembrane serine protease -
  MOP79_RS07805 galU 1522305..1523204 (-) 900 WP_000202229.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MOP79_RS07810 - 1523226..1524242 (-) 1017 WP_000415108.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  MOP79_RS07815 comR 1524400..1524894 (+) 495 WP_223842291.1 helix-turn-helix transcriptional regulator Regulator
  MOP79_RS07820 - 1525017..1525460 (-) 444 Protein_1551 transposase -
  MOP79_RS07825 phoU 1525501..1526151 (-) 651 WP_001245781.1 phosphate signaling complex protein PhoU -
  MOP79_RS07830 pstB 1526166..1526918 (-) 753 WP_000536449.1 phosphate ABC transporter ATP-binding protein PstB -
  MOP79_RS07835 pstA 1526920..1527735 (-) 816 WP_000049767.1 phosphate ABC transporter permease PstA -
  MOP79_RS07840 pstC 1527728..1528591 (-) 864 WP_000595180.1 phosphate ABC transporter permease subunit PstC -
  MOP79_RS07845 - 1528709..1529584 (-) 876 WP_000669493.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 19738.77 Da        Isoelectric Point: 4.8839

>NTDB_id=617319 MOP79_RS07815 WP_223842291.1 1524400..1524894(+) (comR) [Streptococcus pneumoniae strain D39Mega17545]
MIQYMLIIEVNNSGSSCRLREFGEKIKRLRLAKKISRSEFCGDESELSIRQLIRIENGESRPTLTKLKYIAERLEVEDYK
LMPSYIELDKEYLELKYFLMRTPTYEDETIAQKKESVFDKIFEEYYDRLPEEERFIIPNYSYLALANYTVQKLPEKLVEI
LSFW

Nucleotide


Download         Length: 495 bp        

>NTDB_id=617319 MOP79_RS07815 WP_223842291.1 1524400..1524894(+) (comR) [Streptococcus pneumoniae strain D39Mega17545]
TTGATTCAGTATATGCTTATAATAGAGGTAAACAACTCAGGAAGTTCTTGTAGGTTGCGAGAGTTTGGCGAAAAAATTAA
AAGATTACGTTTGGCTAAAAAAATCAGTCGTTCAGAATTTTGTGGTGATGAGTCTGAATTAAGTATCCGTCAATTAATTA
GAATTGAAAATGGAGAATCCAGACCAACACTAACAAAGTTAAAATATATTGCTGAACGTTTGGAGGTTGAAGATTACAAG
TTGATGCCAAGTTATATAGAGTTGGATAAGGAATACCTAGAATTGAAGTATTTCTTGATGAGGACTCCTACATACGAAGA
TGAAACTATCGCCCAAAAGAAAGAGAGTGTTTTTGATAAGATTTTTGAAGAGTATTATGATAGGCTACCTGAGGAAGAAA
GATTTATCATCCCAAATTATTCATATCTAGCACTAGCGAACTACACAGTTCAAAAATTACCAGAAAAGCTAGTTGAAATA
CTGTCCTTCTGGTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(90-137)

Helix-turn-helix (HTH_3)

(26-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

55.833

73.171

0.409
  comR Streptococcus pyogenes MGAS315

54.167

73.171

0.396
  comR Streptococcus mutans UA159

53.333

73.171

0.39