Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LIS75_RS17075 Genome accession   NZ_CP085388
Coordinates   3433451..3434836 (-) Length   461 a.a.
NCBI ID   WP_243662307.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMF18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3428451..3439836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS75_RS17040 (LIS75_17050) flgL 3428626..3429543 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LIS75_RS17045 (LIS75_17055) flgK 3429555..3431072 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  LIS75_RS17050 (LIS75_17060) - 3431088..3431570 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LIS75_RS17055 (LIS75_17065) flgM 3431585..3431851 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIS75_RS17060 (LIS75_17070) - 3431921..3432340 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LIS75_RS17065 (LIS75_17075) comFC 3432414..3433103 (-) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  LIS75_RS17070 (LIS75_17080) - 3433109..3433393 (-) 285 WP_022553866.1 competence protein ComFB -
  LIS75_RS17075 (LIS75_17085) comFA 3433451..3434836 (-) 1386 WP_243662307.1 DEAD/DEAH box helicase Machinery gene
  LIS75_RS17080 (LIS75_17090) - 3434944..3435792 (-) 849 WP_024085866.1 DegV family protein -
  LIS75_RS17085 (LIS75_17095) degU 3435890..3436579 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LIS75_RS17090 (LIS75_17100) degS 3436656..3437819 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LIS75_RS17095 (LIS75_17105) - 3438042..3438689 (+) 648 WP_252206629.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52613.03 Da        Isoelectric Point: 10.2737

>NTDB_id=617307 LIS75_RS17075 WP_243662307.1 3433451..3434836(-) (comFA) [Bacillus velezensis strain CMF18]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWRPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLFD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=617307 LIS75_RS17075 WP_243662307.1 3433451..3434836(-) (comFA) [Bacillus velezensis strain CMF18]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGATATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTCGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627
  comFA Latilactobacillus sakei subsp. sakei 23K

38.182

95.445

0.364