Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LIS75_RS17065 Genome accession   NZ_CP085388
Coordinates   3432414..3433103 (-) Length   229 a.a.
NCBI ID   WP_196758106.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMF18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427414..3438103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS75_RS17030 (LIS75_17040) fliW 3427505..3427936 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  LIS75_RS17035 (LIS75_17045) - 3427966..3428535 (-) 570 WP_015387630.1 DUF6470 family protein -
  LIS75_RS17040 (LIS75_17050) flgL 3428626..3429543 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LIS75_RS17045 (LIS75_17055) flgK 3429555..3431072 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  LIS75_RS17050 (LIS75_17060) - 3431088..3431570 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LIS75_RS17055 (LIS75_17065) flgM 3431585..3431851 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIS75_RS17060 (LIS75_17070) - 3431921..3432340 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LIS75_RS17065 (LIS75_17075) comFC 3432414..3433103 (-) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  LIS75_RS17070 (LIS75_17080) - 3433109..3433393 (-) 285 WP_022553866.1 competence protein ComFB -
  LIS75_RS17075 (LIS75_17085) comFA 3433451..3434836 (-) 1386 WP_243662307.1 DEAD/DEAH box helicase Machinery gene
  LIS75_RS17080 (LIS75_17090) - 3434944..3435792 (-) 849 WP_024085866.1 DegV family protein -
  LIS75_RS17085 (LIS75_17095) degU 3435890..3436579 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LIS75_RS17090 (LIS75_17100) degS 3436656..3437819 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25199.91 Da        Isoelectric Point: 8.4060

>NTDB_id=617306 LIS75_RS17065 WP_196758106.1 3432414..3433103(-) (comFC) [Bacillus velezensis strain CMF18]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LCNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=617306 LIS75_RS17065 WP_196758106.1 3432414..3433103(-) (comFC) [Bacillus velezensis strain CMF18]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTGTAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598