Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMN35_RS17985 Genome accession   NZ_AP019538
Coordinates   3722459..3723064 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain THO-008     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3717459..3728064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMN35_RS17965 (ECTHO008_034280) aes 3717600..3718559 (+) 960 WP_000801809.1 acetyl esterase -
  QMN35_RS17970 (ECTHO008_034290) hemH 3718556..3719518 (-) 963 WP_001250117.1 ferrochelatase -
  QMN35_RS17975 (ECTHO008_034300) adk 3719650..3720294 (-) 645 WP_001220233.1 adenylate kinase -
  QMN35_RS17980 (ECTHO008_034310) htpG 3720475..3722349 (-) 1875 WP_000678202.1 molecular chaperone HtpG -
  QMN35_RS17985 (ECTHO008_034320) recR 3722459..3723064 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QMN35_RS17990 (ECTHO008_034330) ybaB 3723064..3723393 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QMN35_RS17995 (ECTHO008_034340) dnaX 3723446..3725377 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  QMN35_RS18000 (ECTHO008_034350) apt 3725506..3726057 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QMN35_RS18005 (ECTHO008_034360) ybaN 3726210..3726587 (-) 378 WP_001188905.1 DUF454 family protein -
  QMN35_RS18010 (ECTHO008_034370) priC 3726657..3727184 (+) 528 WP_000844856.1 primosomal replication protein N'' -
  QMN35_RS18015 (ECTHO008_034380) rsmS 3727198..3727359 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=61723 QMN35_RS17985 WP_001195025.1 3722459..3723064(-) (recR) [Escherichia coli strain THO-008]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=61723 QMN35_RS17985 WP_001195025.1 3722459..3723064(-) (recR) [Escherichia coli strain THO-008]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment