Detailed information NTG0617223

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LIN44_RS03595
• Genome accession: NZ_CP085344
• Coordinates: 760761..761660 (-)
• Length: 299 a.a.
• NCBI ID: WP_227313537.1
• Uniprot ID: -
• Organism: Cupriavidus sp. MP-37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 755761..766660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIN44_RS03570 (LIN44_03570)	-	756278..756724 (+)	447	WP_227313535.1	NUDIX domain-containing protein	-
LIN44_RS03575 (LIN44_03575)	-	756815..758853 (+)	2039	Protein_695	OPT family oligopeptide transporter	-
LIN44_RS03580 (LIN44_03580)	-	758879..759067 (-)	189	WP_018006248.1	DNA gyrase inhibitor YacG	-
LIN44_RS03585 (LIN44_03585)	zapD	759085..759843 (-)	759	WP_012353939.1	cell division protein ZapD	-
LIN44_RS03590 (LIN44_03590)	coaE	760052..760678 (-)	627	WP_227313536.1	dephospho-CoA kinase	-
LIN44_RS03595 (LIN44_03595)	pilD	760761..761660 (-)	900	WP_227313537.1	A24 family peptidase	Machinery gene
LIN44_RS03600 (LIN44_03600)	-	761664..762935 (-)	1272	WP_227313538.1	type II secretion system F family protein	-
LIN44_RS03605 (LIN44_03605)	pilB	763001..764725 (-)	1725	WP_227313539.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LIN44_RS03610 (LIN44_03610)	-	765047..765385 (+)	339	WP_227313540.1	type II toxin-antitoxin system RelE/ParE family toxin	-
LIN44_RS03615 (LIN44_03615)	-	765375..765686 (+)	312	WP_227313541.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 32181.44 Da
• Isoelectric Point: 8.3424

>NTDB_id=617223 LIN44_RS03595 WP_227313537.1 760761..761660(-) (pilD) [Cupriavidus sp. MP-37]
MQSVWSASPFSTSTAPLLHALAALPPVFLVAAAALLGLVVGSFLNVVIHRVPRMMERDEANYIAELRGDPLPYPGRYNLM
VPRSACPHCGHAIAPWENVPVLSYLFLRGRCSACKAPISVRYPLVELACGVLSALVAWRFGPGAQALAALVLVWGLLALT
MIDADTQLLPDQITLPLLWMGLLLNLASLFVALPDAVIGAAAGYLVLWIAYWLFRLLRGKEGMGFGDFKLMAALGAWFGW
QALPALLLLSSVAGVLFGLANIALRRQERDTPFPFGPFIALAGVVVLLFGPGVLPLFAW

Nucleotide

• Length: 900 bp

>NTDB_id=617223 LIN44_RS03595 WP_227313537.1 760761..761660(-) (pilD) [Cupriavidus sp. MP-37]
ATGCAGTCTGTGTGGTCCGCATCTCCCTTTTCGACCAGCACCGCCCCGCTGCTGCATGCGCTGGCGGCGCTGCCGCCCGT
CTTCCTGGTGGCGGCCGCGGCGCTGCTGGGGCTGGTGGTCGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGCGCA
TGATGGAGCGCGACGAGGCCAACTATATTGCCGAACTGCGCGGCGACCCGCTGCCCTACCCCGGCCGCTACAACCTGATG
GTGCCGCGCTCGGCCTGCCCGCATTGCGGCCACGCCATCGCCCCGTGGGAAAACGTGCCGGTGCTGAGCTACCTGTTCCT
GCGTGGCCGCTGCTCGGCGTGCAAGGCGCCGATCAGCGTGCGCTATCCGCTGGTGGAGCTGGCCTGCGGCGTGCTGAGCG
CGCTGGTGGCATGGCGCTTCGGCCCGGGCGCGCAGGCGCTGGCCGCGCTGGTGCTGGTATGGGGGCTGCTGGCGTTGACC
ATGATCGATGCCGATACGCAATTGCTGCCGGACCAGATCACGCTGCCGCTGCTGTGGATGGGGCTGCTGCTGAACCTGGC
CAGCCTGTTCGTGGCGCTGCCCGACGCGGTGATCGGCGCCGCCGCCGGCTACCTGGTGCTGTGGATCGCCTACTGGCTGT
TCCGGCTGCTGCGCGGCAAGGAAGGCATGGGCTTCGGCGACTTCAAGCTGATGGCGGCGCTGGGGGCGTGGTTCGGCTGG
CAGGCGCTGCCGGCGCTGTTGCTGCTGTCGTCGGTGGCCGGCGTGCTGTTCGGGCTGGCCAATATCGCGCTGCGCCGCCA
GGAGCGCGACACGCCGTTCCCGTTCGGGCCCTTCATTGCGCTGGCCGGCGTGGTGGTGCTGCTGTTCGGCCCCGGGGTGC
TGCCGCTGTTTGCCTGGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (35-140)

• Type IV leader peptidase family (Peptidase_A24) (150-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.094	88.629	0.488
pilD	Vibrio campbellii strain DS40M4	51.273	91.973	0.472
pilD	Neisseria gonorrhoeae MS11	48.239	94.983	0.458
pilD	Acinetobacter baumannii D1279779	47.232	90.635	0.428
pilD	Acinetobacter nosocomialis M2	46.863	90.635	0.425