Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LI754_RS05465 Genome accession   NZ_CP085320
Coordinates   1092290..1093276 (+) Length   328 a.a.
NCBI ID   WP_044288851.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CJFA-182     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1087290..1098276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS05440 trpS 1087880..1088869 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  LI754_RS05445 spxA 1089164..1089559 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  LI754_RS05450 - 1089791..1091110 (+) 1320 WP_044288848.1 ISL3-like element IS1181 family transposase -
  LI754_RS05460 mecA 1091450..1092169 (+) 720 WP_001217728.1 adaptor protein MecA -
  LI754_RS05465 coiA 1092290..1093276 (+) 987 WP_044288851.1 competence protein CoiA Machinery gene
  LI754_RS05470 pepF 1093324..1095132 (+) 1809 WP_323150457.1 oligoendopeptidase F -
  LI754_RS05475 yjbH 1095592..1096398 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  LI754_RS05480 - 1096421..1096786 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  LI754_RS05485 - 1096890..1097483 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  LI754_RS05490 - 1097669..1098016 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38889.54 Da        Isoelectric Point: 9.5714

>NTDB_id=617186 LI754_RS05465 WP_044288851.1 1092290..1093276(+) (coiA) [Staphylococcus aureus strain CJFA-182]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHVVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=617186 LI754_RS05465 WP_044288851.1 1092290..1093276(+) (coiA) [Staphylococcus aureus strain CJFA-182]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAAAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGTTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

98.78

100

0.988
  coiA Staphylococcus aureus MW2

98.171

100

0.982