Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NGFG_RS00525 Genome accession   NC_022240
Coordinates   104463..105062 (-) Length   199 a.a.
NCBI ID   WP_003687354.1    Uniprot ID   A0AA44U8R8
Organism   Neisseria gonorrhoeae MS11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99463..110062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGFG_RS00505 (NGFG_00231) - 99632..100144 (-) 513 WP_003687349.1 shikimate kinase -
  NGFG_RS00510 (NGFG_00232) pilQ 101039..103233 (-) 2195 Protein_92 type IV pilus secretin PilQ Machinery gene
  NGFG_RS00515 (NGFG_00233) pilP 103252..103797 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  NGFG_RS00520 (NGFG_00234) - 103815..104462 (-) 648 WP_003694754.1 type 4a pilus biogenesis protein PilO -
  NGFG_RS00525 (NGFG_00235) pilN 104463..105062 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  NGFG_RS00530 (NGFG_00236) pilM 105065..106180 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  NGFG_RS00535 (NGFG_00237) - 106332..108728 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  NGFG_RS00540 (NGFG_00238) yihA 108848..109477 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22183.53 Da        Isoelectric Point: 9.8898

>NTDB_id=61701 NGFG_RS00525 WP_003687354.1 104463..105062(-) (pilN) [Neisseria gonorrhoeae MS11]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSEIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=61701 NGFG_RS00525 WP_003687354.1 104463..105062(-) (pilN) [Neisseria gonorrhoeae MS11]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAATAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

97.487

100

0.975

Multiple sequence alignment