Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NGFG_RS00515 Genome accession   NC_022240
Coordinates   103252..103797 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae MS11     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98252..108797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGFG_RS00500 (NGFG_00230) aroB 98473..99552 (-) 1080 WP_003687348.1 3-dehydroquinate synthase -
  NGFG_RS00505 (NGFG_00231) - 99632..100144 (-) 513 WP_003687349.1 shikimate kinase -
  NGFG_RS00510 (NGFG_00232) pilQ 101039..103233 (-) 2195 Protein_92 type IV pilus secretin PilQ Machinery gene
  NGFG_RS00515 (NGFG_00233) pilP 103252..103797 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  NGFG_RS00520 (NGFG_00234) - 103815..104462 (-) 648 WP_003694754.1 type 4a pilus biogenesis protein PilO -
  NGFG_RS00525 (NGFG_00235) pilN 104463..105062 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  NGFG_RS00530 (NGFG_00236) pilM 105065..106180 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  NGFG_RS00535 (NGFG_00237) - 106332..108728 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=61700 NGFG_RS00515 WP_003687351.1 103252..103797(-) (pilP) [Neisseria gonorrhoeae MS11]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=61700 NGFG_RS00515 WP_003687351.1 103252..103797(-) (pilP) [Neisseria gonorrhoeae MS11]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983

Multiple sequence alignment