Detailed information NTG0617002

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LJA38_RS16615
• Genome accession: NZ_CP085283
• Coordinates: 3406241..3407404 (-)
• Length: 387 a.a.
• NCBI ID: WP_003151385.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain TPS3N
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3401241..3412404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJA38_RS16585	-	3401506..3401925 (-)	420	WP_003151392.1	TIGR03826 family flagellar region protein	-
LJA38_RS16590	comFC	3401999..3402688 (-)	690	WP_196616643.1	phosphoribosyltransferase family protein	Machinery gene
LJA38_RS16595	-	3402694..3402978 (-)	285	WP_003151389.1	competence protein ComFB	-
LJA38_RS16600	comFA	3403036..3404421 (-)	1386	WP_024085865.1	DEAD/DEAH box helicase	Machinery gene
LJA38_RS16605	-	3404529..3405377 (-)	849	WP_024085866.1	DegV family protein	-
LJA38_RS16610	degU	3405475..3406164 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
LJA38_RS16615	degS	3406241..3407404 (-)	1164	WP_003151385.1	two-component sensor histidine kinase DegS	Regulator
LJA38_RS16620	-	3407627..3408274 (+)	648	WP_003151384.1	YigZ family protein	-
LJA38_RS16625	-	3408279..3409493 (+)	1215	WP_014305930.1	LCP family protein	-
LJA38_RS16630	-	3409583..3410659 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
LJA38_RS16635	-	3410792..3411988 (-)	1197	WP_069013672.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.82 Da
• Isoelectric Point: 7.1378

>NTDB_id=617002 LJA38_RS16615 WP_003151385.1 3406241..3407404(-) (degS) [Bacillus velezensis strain TPS3N]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=617002 LJA38_RS16615 WP_003151385.1 3406241..3407404(-) (degS) [Bacillus velezensis strain TPS3N]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTGAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCTACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTTGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948