Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LJA38_RS16590 Genome accession   NZ_CP085283
Coordinates   3401999..3402688 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3396999..3407688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS16555 fliW 3397090..3397521 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  LJA38_RS16560 - 3397551..3398120 (-) 570 WP_024085861.1 DUF6470 family protein -
  LJA38_RS16565 flgL 3398211..3399128 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LJA38_RS16570 flgK 3399140..3400657 (-) 1518 WP_101312086.1 flagellar hook-associated protein FlgK -
  LJA38_RS16575 - 3400673..3401155 (-) 483 WP_024085863.1 flagellar protein FlgN -
  LJA38_RS16580 flgM 3401170..3401436 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LJA38_RS16585 - 3401506..3401925 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LJA38_RS16590 comFC 3401999..3402688 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  LJA38_RS16595 - 3402694..3402978 (-) 285 WP_003151389.1 competence protein ComFB -
  LJA38_RS16600 comFA 3403036..3404421 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  LJA38_RS16605 - 3404529..3405377 (-) 849 WP_024085866.1 DegV family protein -
  LJA38_RS16610 degU 3405475..3406164 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LJA38_RS16615 degS 3406241..3407404 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=616999 LJA38_RS16590 WP_196616643.1 3401999..3402688(-) (comFC) [Bacillus velezensis strain TPS3N]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=616999 LJA38_RS16590 WP_196616643.1 3401999..3402688(-) (comFC) [Bacillus velezensis strain TPS3N]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGTAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603