Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LJA38_RS16610 Genome accession   NZ_CP085283
Coordinates   3405475..3406164 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain TPS3N     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400475..3411164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS16575 - 3400673..3401155 (-) 483 WP_024085863.1 flagellar protein FlgN -
  LJA38_RS16580 flgM 3401170..3401436 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LJA38_RS16585 - 3401506..3401925 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LJA38_RS16590 comFC 3401999..3402688 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  LJA38_RS16595 - 3402694..3402978 (-) 285 WP_003151389.1 competence protein ComFB -
  LJA38_RS16600 comFA 3403036..3404421 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  LJA38_RS16605 - 3404529..3405377 (-) 849 WP_024085866.1 DegV family protein -
  LJA38_RS16610 degU 3405475..3406164 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LJA38_RS16615 degS 3406241..3407404 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LJA38_RS16620 - 3407627..3408274 (+) 648 WP_003151384.1 YigZ family protein -
  LJA38_RS16625 - 3408279..3409493 (+) 1215 WP_014305930.1 LCP family protein -
  LJA38_RS16630 - 3409583..3410659 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=617001 LJA38_RS16610 WP_003219701.1 3405475..3406164(-) (degU) [Bacillus velezensis strain TPS3N]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=617001 LJA38_RS16610 WP_003219701.1 3405475..3406164(-) (degU) [Bacillus velezensis strain TPS3N]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1