Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LJA38_RS11795 Genome accession   NZ_CP085283
Coordinates   2480140..2480475 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2475140..2485475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS11775 gcvT 2475751..2476851 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  LJA38_RS11780 - 2477274..2478944 (+) 1671 WP_003153107.1 SNF2-related protein -
  LJA38_RS11785 - 2478962..2479756 (+) 795 WP_014305407.1 YqhG family protein -
  LJA38_RS11790 sinI 2479933..2480106 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  LJA38_RS11795 sinR 2480140..2480475 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LJA38_RS11800 tasA 2480523..2481308 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  LJA38_RS11805 sipW 2481372..2481956 (-) 585 WP_012117977.1 signal peptidase I SipW -
  LJA38_RS11810 tapA 2481928..2482599 (-) 672 WP_063174755.1 amyloid fiber anchoring/assembly protein TapA -
  LJA38_RS11815 - 2482858..2483187 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  LJA38_RS11820 - 2483227..2483406 (-) 180 WP_003153093.1 YqzE family protein -
  LJA38_RS11825 comGG 2483463..2483840 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  LJA38_RS11830 comGF 2483841..2484341 (-) 501 WP_232789965.1 competence type IV pilus minor pilin ComGF -
  LJA38_RS11835 comGE 2484250..2484564 (-) 315 WP_041481885.1 competence type IV pilus minor pilin ComGE Machinery gene
  LJA38_RS11840 comGD 2484548..2484985 (-) 438 WP_095318402.1 competence type IV pilus minor pilin ComGD Machinery gene
  LJA38_RS11845 comGC 2484975..2485283 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=616975 LJA38_RS11795 WP_003153104.1 2480140..2480475(+) (sinR) [Bacillus velezensis strain TPS3N]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=616975 LJA38_RS11795 WP_003153104.1 2480140..2480475(+) (sinR) [Bacillus velezensis strain TPS3N]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991