Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LJA36_RS16880 Genome accession   NZ_CP085282
Coordinates   3490727..3491341 (+) Length   204 a.a.
NCBI ID   WP_015240245.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3485727..3496341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS16845 aroE 3486414..3487256 (+) 843 WP_039254404.1 shikimate dehydrogenase -
  LJA36_RS16850 yhbY 3487250..3487540 (+) 291 WP_007408257.1 ribosome assembly RNA-binding protein YhbY -
  LJA36_RS16855 - 3487551..3488120 (+) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  LJA36_RS16860 yqeK 3488110..3488670 (+) 561 WP_014418422.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LJA36_RS16865 rsfS 3488688..3489044 (+) 357 WP_007408260.1 ribosome silencing factor -
  LJA36_RS16870 - 3489041..3489778 (+) 738 WP_015417856.1 class I SAM-dependent methyltransferase -
  LJA36_RS16875 comER 3489847..3490668 (-) 822 WP_039254409.1 late competence protein ComER -
  LJA36_RS16880 comEA 3490727..3491341 (+) 615 WP_015240245.1 helix-hairpin-helix domain-containing protein Machinery gene
  LJA36_RS16885 - 3491408..3491977 (+) 570 WP_003152868.1 ComE operon protein 2 -
  LJA36_RS16890 comEC 3491978..3494329 (+) 2352 WP_039254415.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LJA36_RS16895 - 3494348..3494482 (-) 135 WP_003152870.1 YqzM family protein -
  LJA36_RS16900 - 3494523..3494674 (+) 152 Protein_3285 hypothetical protein -
  LJA36_RS16905 holA 3494714..3495755 (+) 1042 Protein_3286 DNA polymerase III subunit delta -
  LJA36_RS16910 rpsT 3495772..3496038 (-) 267 WP_003152876.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22209.32 Da        Isoelectric Point: 5.5211

>NTDB_id=616922 LJA36_RS16880 WP_015240245.1 3490727..3491341(+) (comEA) [Bacillus amyloliquefaciens strain TPS17]
MTKAMMTERLRRNLKILGACLAAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREENGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=616922 LJA36_RS16880 WP_015240245.1 3490727..3491341(+) (comEA) [Bacillus amyloliquefaciens strain TPS17]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGCGGCAGGGGCGGTTTT
TATCTGTATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGATAAGATTATGATTGATGTGAAAGGTGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGGGTGACGCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAATGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAACGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.854

94.118

0.554
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.545

100

0.368
  comEA/celA/cilE Streptococcus mitis SK321

35.071

100

0.363