Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LJA36_RS14145 Genome accession   NZ_CP085282
Coordinates   2974357..2975001 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969357..2980001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS14120 - 2969759..2970100 (-) 342 WP_015418107.1 hypothetical protein -
  LJA36_RS14125 degQ 2970563..2970703 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LJA36_RS14130 comQ 2970834..2971820 (+) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  LJA36_RS14135 comX 2971783..2971953 (+) 171 WP_003152048.1 competence pheromone ComX Regulator
  LJA36_RS14140 comP 2971973..2974276 (+) 2304 WP_040238945.1 histidine kinase Regulator
  LJA36_RS14145 comA 2974357..2975001 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  LJA36_RS14150 - 2975023..2975406 (+) 384 WP_040238946.1 hotdog fold thioesterase -
  LJA36_RS14155 mnhG 2975446..2975820 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LJA36_RS14160 - 2975804..2976088 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  LJA36_RS14165 - 2976088..2976564 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  LJA36_RS14170 - 2976570..2978051 (-) 1482 WP_015418103.1 Na+/H+ antiporter subunit D -
  LJA36_RS14175 - 2978044..2978385 (-) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  LJA36_RS14180 - 2978385..2978816 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=616913 LJA36_RS14145 WP_003152052.1 2974357..2975001(+) (comA) [Bacillus amyloliquefaciens strain TPS17]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=616913 LJA36_RS14145 WP_003152052.1 2974357..2975001(+) (comA) [Bacillus amyloliquefaciens strain TPS17]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864