Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LJA36_RS12125 Genome accession   NZ_CP085282
Coordinates   2548343..2549728 (+) Length   461 a.a.
NCBI ID   WP_040238815.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2543343..2554728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS12105 - 2544490..2545137 (-) 648 WP_003151384.1 YigZ family protein -
  LJA36_RS12110 degS 2545360..2546523 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LJA36_RS12115 degU 2546600..2547289 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LJA36_RS12120 - 2547387..2548235 (+) 849 WP_015418336.1 DegV family protein -
  LJA36_RS12125 comFA 2548343..2549728 (+) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  LJA36_RS12130 - 2549786..2550070 (+) 285 WP_003151389.1 competence protein ComFB -
  LJA36_RS12135 comFC 2550076..2550765 (+) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  LJA36_RS12140 - 2550839..2551258 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LJA36_RS12145 flgM 2551328..2551594 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LJA36_RS12150 - 2551609..2552091 (+) 483 WP_003151394.1 flagellar protein FlgN -
  LJA36_RS12155 flgK 2552107..2553624 (+) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  LJA36_RS12160 flgL 2553636..2554553 (+) 918 WP_015418330.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52515.94 Da        Isoelectric Point: 10.0818

>NTDB_id=616905 LJA36_RS12125 WP_040238815.1 2548343..2549728(+) (comFA) [Bacillus amyloliquefaciens strain TPS17]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKKAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=616905 LJA36_RS12125 WP_040238815.1 2548343..2549728(+) (comFA) [Bacillus amyloliquefaciens strain TPS17]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGAAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631