Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LJA36_RS12115 Genome accession   NZ_CP085282
Coordinates   2546600..2547289 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541600..2552289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS12095 - 2542105..2543181 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  LJA36_RS12100 - 2543271..2544485 (-) 1215 WP_015418337.1 LCP family protein -
  LJA36_RS12105 - 2544490..2545137 (-) 648 WP_003151384.1 YigZ family protein -
  LJA36_RS12110 degS 2545360..2546523 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LJA36_RS12115 degU 2546600..2547289 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LJA36_RS12120 - 2547387..2548235 (+) 849 WP_015418336.1 DegV family protein -
  LJA36_RS12125 comFA 2548343..2549728 (+) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  LJA36_RS12130 - 2549786..2550070 (+) 285 WP_003151389.1 competence protein ComFB -
  LJA36_RS12135 comFC 2550076..2550765 (+) 690 WP_199776864.1 phosphoribosyltransferase family protein Machinery gene
  LJA36_RS12140 - 2550839..2551258 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  LJA36_RS12145 flgM 2551328..2551594 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LJA36_RS12150 - 2551609..2552091 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=616904 LJA36_RS12115 WP_003219701.1 2546600..2547289(+) (degU) [Bacillus amyloliquefaciens strain TPS17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=616904 LJA36_RS12115 WP_003219701.1 2546600..2547289(+) (degU) [Bacillus amyloliquefaciens strain TPS17]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1