Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   LHL71_RS04625 Genome accession   NZ_CP085278
Coordinates   888848..889111 (-) Length   87 a.a.
NCBI ID   WP_227360653.1    Uniprot ID   -
Organism   Lentilactobacillus laojiaonis strain IM3328     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 883848..894111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHL71_RS04610 (LHL71_04610) secA 884925..887288 (-) 2364 WP_227360650.1 preprotein translocase subunit SecA -
  LHL71_RS04615 (LHL71_04615) raiA 887455..888057 (-) 603 WP_227360651.1 ribosome-associated translation inhibitor RaiA -
  LHL71_RS04620 (LHL71_04620) - 888171..888587 (-) 417 WP_227360652.1 phosphoribosyltransferase family protein -
  LHL71_RS04625 (LHL71_04625) comFA/cflA 888848..889111 (-) 264 WP_227360653.1 helicase-related protein Machinery gene
  LHL71_RS04630 (LHL71_04630) - 889115..890173 (-) 1059 WP_227360654.1 DEAD/DEAH box helicase family protein -
  LHL71_RS04635 (LHL71_04635) - 890221..890859 (+) 639 WP_227360655.1 YigZ family protein -
  LHL71_RS04640 (LHL71_04640) - 890891..891982 (-) 1092 WP_227360656.1 MraY family glycosyltransferase -
  LHL71_RS04645 (LHL71_04645) - 892179..892610 (+) 432 WP_227360657.1 CidA/LrgA family protein -
  LHL71_RS04650 (LHL71_04650) lrgB 892626..893378 (+) 753 WP_227360658.1 antiholin-like protein LrgB -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9924.52 Da        Isoelectric Point: 10.2183

>NTDB_id=616849 LHL71_RS04625 WP_227360653.1 888848..889111(-) (comFA/cflA) [Lentilactobacillus laojiaonis strain IM3328]
MRDHEFKFLITTTILERGVTFPGIDVMVINADSEIFSTSALVQIAGRVGRSITRPTGEVLFIYEHLNKNIRQAQYQINLM
NRKAKSI

Nucleotide


Download         Length: 264 bp        

>NTDB_id=616849 LHL71_RS04625 WP_227360653.1 888848..889111(-) (comFA/cflA) [Lentilactobacillus laojiaonis strain IM3328]
ATGCGAGACCATGAATTTAAATTCTTAATAACTACCACTATCTTAGAACGGGGAGTAACTTTTCCAGGAATTGATGTTAT
GGTTATCAATGCAGATAGTGAAATTTTTTCAACTTCGGCATTAGTTCAAATTGCTGGGAGGGTTGGTAGAAGTATAACTA
GACCAACTGGAGAAGTTTTATTTATTTATGAACACTTAAATAAAAACATTCGGCAGGCACAATACCAAATTAATCTAATG
AATCGTAAGGCTAAATCTATATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(2-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

54.217

95.402

0.517
  comFA/cflA Streptococcus pneumoniae D39

54.217

95.402

0.517
  comFA/cflA Streptococcus pneumoniae R6

54.217

95.402

0.517
  comFA/cflA Streptococcus pneumoniae TIGR4

54.217

95.402

0.517
  comFA/cflA Streptococcus mitis NCTC 12261

54.217

95.402

0.517
  comFA/cflA Streptococcus mitis SK321

54.217

95.402

0.517
  comFA Lactococcus lactis subsp. cremoris KW2

52.439

94.253

0.494
  comFA Bacillus subtilis subsp. subtilis str. 168

45.349

98.851

0.448
  comFA Latilactobacillus sakei subsp. sakei 23K

38.372

98.851

0.379