Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SANR_RS01795 Genome accession   NC_022239
Coordinates   343468..345417 (+) Length   649 a.a.
NCBI ID   WP_020999470.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 338468..350417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS01780 (SANR_0347) ftsL 339378..339698 (+) 321 WP_003033780.1 cell division protein FtsL -
  SANR_RS01785 (SANR_0348) pbp2X 339702..341957 (+) 2256 WP_020999469.1 penicillin-binding protein PBP2X -
  SANR_RS01790 (SANR_0349) mraY 341959..342942 (+) 984 WP_003033744.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  SANR_RS01795 (SANR_0350) amiA3 343468..345417 (+) 1950 WP_020999470.1 peptide ABC transporter substrate-binding protein Regulator
  SANR_RS01805 (SANR_0352) - 345888..346769 (+) 882 WP_003025917.1 class II fructose-bisphosphate aldolase -
  SANR_RS01810 (SANR_0353) - 346867..347328 (+) 462 WP_003033754.1 GNAT family N-acetyltransferase -
  SANR_RS01820 (SANR_0355) - 347668..348114 (+) 447 WP_003031093.1 LytTR family DNA-binding domain-containing protein -
  SANR_RS01825 (SANR_0356) - 348120..348782 (+) 663 WP_020999471.1 LiaF transmembrane domain-containing protein -
  SANR_RS01830 (SANR_0357) rpmB 348917..349105 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  SANR_RS01835 (SANR_0358) - 349281..349646 (+) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 649 a.a.        Molecular weight: 72182.40 Da        Isoelectric Point: 7.3790

>NTDB_id=61652 SANR_RS01795 WP_020999470.1 343468..345417(+) (amiA3) [Streptococcus anginosus C238]
MKSSKWIIATGVVLSAGILLSGCGKSASSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDQYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYASVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLSRAETYWNSKTTNNILFPVNADFLKSQGKNFGSVKPTSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKAATQEAVLNKAFRQAINFAYNRTSYGAQSNGKEKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLADAQD
AYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGTENVIIDIQQMSSDELNNISYFA
NTAAQKDYDLYNGGWSGDYQDPSTYLDTLNIKNGGSLQNFGLEPGQENDKIKAVGLDTYTEMLAEANAETNEATRYEKYA
EAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGASSSYFKYVKLQDKIVTTKEYESAKKKWLKEKETSNKKA
QDDYENHVK

Nucleotide


Download         Length: 1950 bp        

>NTDB_id=61652 SANR_RS01795 WP_020999470.1 343468..345417(+) (amiA3) [Streptococcus anginosus C238]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGCGCTGGAATCCTATTATCAGGTTGTGGCAAGTCAGC
TTCTAGCACATCAACTTATTCATACGTGTATACACAAGATCCAGACACGCTAAATTATCTGATGGCGAACCGTGCGACAA
CTTCAGATGTTGTGACTAACTTAGTTGATGGATTATTGGAAAATGACCAGTACGGAAATTTAGTTCCGGCGCTTGCTAAG
TCATGGACAGTCTCCAAAGATGGCTTGACATATACGTATAAATTACGTAAAGATGCTAAATGGTACACATCAGAAGGTGA
AGAGTACGCAAGTGTAAAAGCGCAAGACTTTGTAACTGGCTTGAAATACGCCGCAGATAATAAATCAGAAGCCCTTTACC
TCGTTCAAGATTCTGTCAAAGGTTTAGATGCTTACATCAAGGGTGAAACGAAAGATTTTTCAACGGTTGGAGTAAAAGCT
CTAGATGACTATACAGTACAGTATACACTCAGCCGTGCAGAGACTTATTGGAATTCAAAAACGACCAATAATATCCTCTT
CCCAGTTAATGCAGATTTCTTGAAATCACAAGGAAAAAATTTTGGTTCTGTAAAACCAACCAGCATTCTATACAATGGTC
CTTATCTATTGAAGTCTCTGACAGCCAAGTCTTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CATTTGGATAACATTAAATTGACATATTATGACGGCTCTGACCAAGAAGCCCTTATCCGTAACTTCACAGATGGTGCCTA
TAGTGCAGCTCGTCTTTATCCAAATAGCTCTAGTTTTGCTTCTGTTAAGAAACAATATGCTAACAATATCATCTATAGTT
TGCAAGATGCGACCAGCTACTATTATAACTTTAATTTAAATCGTCAGTCCTATAACCATACATCGAAGAAAACAGATGCT
CAAAAGGCTGCGACCCAAGAAGCGGTGCTAAATAAAGCTTTCCGTCAAGCTATCAACTTTGCCTATAATCGTACTTCTTA
TGGTGCACAAAGTAATGGGAAAGAAAAGGTATTGCGGAACACACTCGTGCCACCAACATTTGTTTCTATCGGTGATAAAA
CGTTTGGTGATGTTGTGTCTTCTAAGCTGGTAAACTATGGCTCAGAATGGTCAAACATGAATTTGGCCGATGCACAAGAT
GCTTATTACAATCCAGAAAAAGCTAAAGCAAAGTTTGCTCAAGCTAAAGCAGAACTGCAAGCAAAGGGTGTTCAGTTTCC
TATCCACTTAGATGTACCAGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCCATGAAACAATCTGTTGAGT
CTGTCTTAGGCACAGAAAATGTTATCATTGATATTCAACAAATGAGTTCAGATGAATTAAACAATATCAGTTATTTTGCT
AATACAGCTGCTCAAAAGGACTATGATTTGTATAATGGTGGTTGGTCTGGTGACTATCAAGACCCATCTACTTATCTAGA
TACTTTGAATATAAAAAATGGTGGTAGTTTGCAAAACTTTGGTCTGGAACCAGGTCAAGAAAATGATAAGATCAAGGCAG
TTGGACTGGACACATATACAGAGATGCTAGCAGAAGCAAATGCTGAAACCAACGAAGCTACACGCTATGAAAAATATGCC
GAGGCGCAAGCATGGTTAATTGATAGTGGCTTGACAATGCCAAACCTCTCTCTTGGAGGAACACCATCTGTGACGAAAAC
AGTTCCATTTAGCCGTTCTTATTCATTAGTTGGAATCAAAGGTGCTTCAAGCAGTTATTTCAAATATGTCAAACTGCAAG
ACAAAATTGTAACAACAAAAGAATATGAAAGTGCTAAAAAGAAATGGCTAAAAGAAAAAGAAACCTCTAATAAAAAAGCG
CAAGATGACTACGAAAATCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.621

100

0.573
  amiA Streptococcus salivarius strain HSISS4

56.621

100

0.573
  amiA3 Streptococcus thermophilus LMG 18311

56.469

100

0.572

Multiple sequence alignment