Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LG330_RS14295 Genome accession   NZ_CP085252
Coordinates   2681354..2682517 (-) Length   387 a.a.
NCBI ID   WP_404404924.1    Uniprot ID   -
Organism   Jeotgalibacillus malaysiensis strain ABH-525     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2676354..2687517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG330_RS14265 (LG330_14215) fliS 2676625..2677068 (-) 444 WP_404404914.1 flagellar export chaperone FliS -
  LG330_RS14270 (LG330_14220) - 2677234..2677527 (-) 294 WP_404404916.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  LG330_RS14275 (LG330_14225) - 2677524..2679725 (-) 2202 WP_404404918.1 hypothetical protein -
  LG330_RS14280 (LG330_14230) flgM 2679783..2680049 (-) 267 WP_039811186.1 flagellar biosynthesis anti-sigma factor FlgM -
  LG330_RS14285 (LG330_14235) - 2680165..2680578 (-) 414 WP_404404920.1 TIGR03826 family flagellar region protein -
  LG330_RS14290 (LG330_14240) - 2680680..2681297 (-) 618 WP_404404922.1 ComF family protein -
  LG330_RS14295 (LG330_14245) comFA 2681354..2682517 (-) 1164 WP_404404924.1 DEAD/DEAH box helicase Machinery gene
  LG330_RS14300 (LG330_14250) - 2682901..2683743 (-) 843 WP_404404926.1 DegV family protein -
  LG330_RS14305 (LG330_14255) - 2683979..2684752 (+) 774 WP_404404928.1 transposase -
  LG330_RS14310 (LG330_14260) - 2684851..2686824 (-) 1974 WP_404404930.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 43033.29 Da        Isoelectric Point: 9.7945

>NTDB_id=616478 LG330_RS14295 WP_404404924.1 2681354..2682517(-) (comFA) [Jeotgalibacillus malaysiensis strain ABH-525]
MFASHHCGKCGKHCMYCRNCIQMGKASECERIVLWKGAPFEQSIPPEPILQWEGKLSRPQQRASDALLTSIDKKNSILVH
AVCGAGKTEILFHAIEKALRKELRVCIATPRRDVVQELAPRLKRAFPTTEIESLYGGSEDRLPHAHLTIATTHQLIRFRE
AFDVMVIDEVDAFPFSADDALQKTSQLARKKSSTLIYLSATPSRKIKTDEIVKIPARFHGHPLPVPETKWLGNWKKTLLK
DKVDPILLRWLAGHPKALVFMPDIESMQAYSMLLNVPSVHSADPDRGEKVMAFREGKSKVLLTTTILERGVTFSGVEVAV
VGAGDPVFTEAALVQIAGRVGRDPLKPAGNITFFHNGLTDAMVRAQRHIVLMNKEAVKLGYVKGILV

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=616478 LG330_RS14295 WP_404404924.1 2681354..2682517(-) (comFA) [Jeotgalibacillus malaysiensis strain ABH-525]
TTGTTTGCATCTCATCACTGCGGCAAATGTGGTAAGCATTGTATGTACTGCCGTAACTGTATTCAGATGGGGAAAGCATC
TGAGTGTGAGCGGATTGTGCTTTGGAAAGGTGCGCCGTTTGAACAGTCAATTCCTCCTGAACCAATTTTACAGTGGGAAG
GAAAATTATCACGTCCGCAGCAAAGAGCTTCTGATGCACTTCTAACCTCTATAGACAAGAAAAACTCTATCCTAGTTCAT
GCAGTCTGCGGCGCAGGTAAAACAGAAATTCTATTTCATGCGATTGAAAAAGCGCTGCGAAAAGAACTGCGCGTTTGTAT
CGCAACCCCGAGACGAGATGTGGTCCAGGAGCTGGCTCCCCGTTTGAAACGAGCATTCCCAACGACTGAGATTGAGTCGC
TTTATGGCGGGAGTGAAGACAGGCTGCCACATGCACACCTTACGATTGCGACGACACATCAGCTGATCCGGTTCAGGGAA
GCATTTGATGTGATGGTCATTGATGAGGTGGATGCATTTCCGTTTTCAGCAGATGATGCGCTTCAGAAAACTTCTCAATT
AGCCCGCAAAAAATCCTCTACGTTAATTTACCTCAGCGCAACGCCTTCAAGAAAAATAAAAACAGATGAGATTGTTAAAA
TTCCTGCCAGGTTTCACGGACATCCATTACCTGTACCTGAGACGAAGTGGCTTGGAAACTGGAAGAAAACACTACTCAAA
GATAAAGTGGACCCCATTTTACTGAGATGGCTGGCGGGCCATCCGAAAGCGTTAGTATTTATGCCTGACATCGAATCAAT
GCAGGCTTATTCAATGTTGCTTAATGTGCCAAGCGTTCATTCAGCTGATCCTGACCGGGGTGAGAAGGTGATGGCGTTTA
GAGAAGGGAAGTCGAAGGTTTTACTCACGACTACTATTTTAGAAAGAGGTGTGACGTTTTCAGGTGTTGAAGTGGCTGTG
GTTGGCGCGGGGGATCCGGTTTTTACAGAAGCGGCGCTTGTACAGATTGCCGGGAGAGTCGGTCGGGATCCGCTGAAGCC
GGCCGGAAATATCACGTTTTTCCATAACGGTCTGACGGATGCGATGGTGAGAGCGCAGCGGCATATTGTGCTGATGAATA
AGGAGGCAGTGAAGCTTGGGTATGTGAAGGGGATTCTTGTATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(55-204)

Helicase conserved C-terminal domain (Helicase_C)

(252-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

48.092

100

0.488
  comFA Lactococcus lactis subsp. cremoris KW2

39.594

100

0.403
  comFA Latilactobacillus sakei subsp. sakei 23K

37.949

100

0.382
  comFA/cflA Streptococcus mitis SK321

37.995

97.933

0.372
  comFA/cflA Streptococcus pneumoniae R6

37.037

97.674

0.362
  comFA/cflA Streptococcus pneumoniae TIGR4

37.037

97.674

0.362
  comFA/cflA Streptococcus pneumoniae D39

37.037

97.674

0.362
  comFA/cflA Streptococcus pneumoniae Rx1

37.037

97.674

0.362
  comFA/cflA Streptococcus mitis NCTC 12261

36.939

97.933

0.362