Detailed information NTG0615948

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LG327_RS08370
• Genome accession: NZ_CP085217
• Coordinates: 1786044..1787420 (-)
• Length: 458 a.a.
• NCBI ID: WP_404368392.1
• Uniprot ID: -
• Organism: Marinobacter sp. strain QJJ-212
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1781044..1792420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG327_RS08350 (LG327_08350)	-	1781489..1781857 (+)	369	WP_404368382.1	hypothetical protein	-
LG327_RS08355 (LG327_08355)	-	1781854..1784739 (+)	2886	WP_404368385.1	PilC/PilY family type IV pilus protein	-
LG327_RS08360 (LG327_08360)	-	1784743..1785165 (+)	423	WP_404368388.1	type IV pilin protein	-
LG327_RS08365 (LG327_08365)	-	1785262..1785825 (-)	564	WP_404368390.1	GspH/FimT family protein	-
LG327_RS08370 (LG327_08370)	pilR	1786044..1787420 (-)	1377	WP_404368392.1	sigma-54-dependent transcriptional regulator	Regulator
LG327_RS08375 (LG327_08375)	-	1787479..1789116 (-)	1638	WP_404368394.1	sensor histidine kinase	-
LG327_RS08380 (LG327_08380)	-	1789221..1790885 (+)	1665	WP_404368396.1	NAD+ synthase	-
LG327_RS08385 (LG327_08385)	-	1790933..1791763 (-)	831	WP_404368399.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50504.75 Da
• Isoelectric Point: 5.0291

>NTDB_id=615948 LG327_RS08370 WP_404368392.1 1786044..1787420(-) (pilR) [Marinobacter sp. strain QJJ-212]
MTTHTALIVDDEPDIRELLEITLTRMGIETRTAADITTAKTMLSEAPPHLCLTDMNLPDGNGIELVNWIQQHCPNTPVAM
ITAYGNMNTAIESLKAGAFDFVSKPVELPALRDLVNSALRLSESDRPSSGPEKDEPGLLLGESSEIRRLRTQVRKLARSQ
APVFISGESGSGKELVARMIHIQGPRSEAPFVAVNCGAIPSELMESEFFGHKKGSFTGATDNKDGLFRSAHGGTLFLDEV
ADLPLAMQVKLLRAIQEKAVRPVGESKEFPVDIRVLSATHKNLPELVQEGLFRQDLFYRVNVIELSVPPLRARPDDIPLL
ANHVLERIAREYDCEPAHLTAGAIERLKHYEFPGNVRELENILERSFTLCDAITIDAADLHLGTTPALCSGIQAEGENPM
APELPEGEIDLENYLESIERQAIEKALEATRWNKTAAAKRLGISFRALRYKLKKLGLE

Nucleotide

• Length: 1377 bp

>NTDB_id=615948 LG327_RS08370 WP_404368392.1 1786044..1787420(-) (pilR) [Marinobacter sp. strain QJJ-212]
ATGACCACCCATACCGCGCTAATAGTTGATGACGAACCTGACATCCGGGAATTGCTCGAAATCACCCTGACCCGGATGGG
CATCGAGACCCGCACAGCAGCCGACATCACCACAGCGAAAACCATGCTGAGCGAGGCGCCACCACACCTTTGCCTGACTG
ACATGAACCTGCCGGACGGCAATGGCATAGAGCTGGTCAACTGGATCCAGCAGCATTGCCCCAACACACCGGTCGCGATG
ATTACCGCCTATGGCAACATGAACACGGCTATTGAATCCCTCAAGGCCGGCGCTTTCGACTTTGTGTCCAAACCCGTGGA
GCTTCCAGCACTGAGGGATCTGGTCAACAGCGCACTGAGGCTTTCTGAATCCGACCGGCCGTCCAGCGGCCCGGAGAAGG
ACGAGCCAGGCCTGCTGCTGGGGGAGTCATCGGAGATACGCCGTCTGCGCACCCAGGTCCGCAAGCTCGCCCGCAGCCAG
GCTCCGGTCTTTATCAGCGGTGAATCCGGCAGCGGCAAGGAACTGGTGGCAAGGATGATCCACATTCAGGGGCCCAGAAG
CGAAGCCCCCTTTGTCGCCGTCAACTGCGGCGCCATTCCCTCTGAGCTGATGGAAAGCGAGTTCTTCGGACACAAAAAAG
GAAGCTTCACCGGCGCCACCGACAACAAGGATGGCCTCTTCAGATCCGCCCATGGCGGCACACTTTTTCTCGACGAGGTG
GCCGACCTTCCCCTTGCAATGCAGGTCAAGCTGCTCCGGGCGATTCAGGAAAAAGCCGTGCGCCCGGTCGGAGAATCAAA
GGAGTTTCCCGTGGATATCCGCGTGCTGAGCGCGACCCACAAGAACCTTCCCGAGCTGGTCCAGGAAGGCCTTTTCCGCC
AGGATCTGTTTTACCGGGTCAACGTGATTGAGCTGAGCGTGCCGCCCCTCCGGGCCCGCCCAGACGACATCCCCCTCCTT
GCAAACCATGTGCTGGAGCGTATCGCCAGAGAATACGACTGTGAGCCCGCCCATCTGACCGCCGGCGCAATCGAACGGCT
GAAGCATTACGAATTTCCCGGCAATGTGCGGGAGCTGGAAAACATCCTCGAGCGCTCCTTTACCCTCTGCGACGCCATCA
CCATCGATGCCGCTGACCTGCACCTGGGCACCACGCCAGCTCTGTGCTCCGGTATTCAGGCGGAGGGCGAAAATCCCATG
GCACCGGAGCTGCCTGAAGGGGAAATCGATCTGGAGAATTATCTTGAAAGCATCGAGCGGCAGGCCATCGAAAAGGCTCT
GGAGGCCACGCGCTGGAACAAGACGGCAGCGGCGAAGCGGCTGGGAATAAGCTTTCGGGCGTTGCGGTACAAGCTTAAAA
AGTTGGGGCTGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

• Bacterial regulatory protein, Fis family (HTH_8) (415-455)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.771	100	0.633
pilR	Acinetobacter baumannii strain A118	52.268	100	0.528
luxO	Vibrio cholerae strain A1552	36.645	98.908	0.362