Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   NQZ90_RS07885 Genome accession   NZ_CP102148
Coordinates   1605506..1606156 (-) Length   216 a.a.
NCBI ID   WP_015647211.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600506..1611156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS07865 (NQZ90_07865) xseA 1600547..1601890 (-) 1344 WP_257110178.1 exodeoxyribonuclease VII large subunit -
  NQZ90_RS07870 (NQZ90_07870) - 1602057..1602965 (+) 909 WP_024413789.1 neutral zinc metallopeptidase -
  NQZ90_RS07875 (NQZ90_07875) - 1603174..1603725 (-) 552 WP_015647209.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NQZ90_RS07880 (NQZ90_07880) - 1604116..1605504 (-) 1389 WP_306455389.1 HAMP domain-containing sensor histidine kinase -
  NQZ90_RS07885 (NQZ90_07885) scnR 1605506..1606156 (-) 651 WP_015647211.1 response regulator transcription factor Regulator
  NQZ90_RS07890 (NQZ90_07890) - 1606388..1607089 (+) 702 WP_024382375.1 CPBP family intramembrane glutamic endopeptidase -
  NQZ90_RS07895 (NQZ90_07895) - 1607323..1608579 (+) 1257 WP_248021767.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24654.79 Da        Isoelectric Point: 4.8839

>NTDB_id=615604 NQZ90_RS07885 WP_015647211.1 1605506..1606156(-) (scnR) [Streptococcus suis strain DNC15]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQVPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGAILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEGT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=615604 NQZ90_RS07885 WP_015647211.1 1605506..1606156(-) (scnR) [Streptococcus suis strain DNC15]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGGTTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCGTTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAGCAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTATTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGGTACTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.767

100

0.407
  micA Streptococcus pneumoniae Cp1015

38.667

100

0.403
  vicR Streptococcus mutans UA159

37.168

100

0.389