Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   NQZ91_RS07095 Genome accession   NZ_CP102145
Coordinates   1426246..1427157 (-) Length   303 a.a.
NCBI ID   WP_105160475.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1421246..1432157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS07065 (NQZ91_07065) - 1421424..1421567 (+) 144 WP_172022956.1 hypothetical protein -
  NQZ91_RS07070 (NQZ91_07070) - 1421649..1421948 (-) 300 WP_167786105.1 hypothetical protein -
  NQZ91_RS07075 (NQZ91_07075) - 1421941..1422582 (-) 642 WP_105110248.1 ABC transporter ATP-binding protein -
  NQZ91_RS07080 (NQZ91_07080) - 1422584..1424614 (-) 2031 WP_105110249.1 bacteriocin-associated integral membrane family protein -
  NQZ91_RS07085 (NQZ91_07085) - 1424674..1424967 (-) 294 WP_105138597.1 lactococcin 972 family bacteriocin -
  NQZ91_RS07090 (NQZ91_07090) comR 1425321..1426232 (-) 912 WP_257117219.1 XRE family transcriptional regulator Regulator
  NQZ91_RS07095 (NQZ91_07095) comR 1426246..1427157 (-) 912 WP_105160475.1 XRE family transcriptional regulator Regulator
  NQZ91_RS07100 (NQZ91_07100) malQ 1427260..1428774 (-) 1515 WP_105160474.1 4-alpha-glucanotransferase -
  NQZ91_RS07105 (NQZ91_07105) - 1429097..1430353 (+) 1257 WP_105110255.1 extracellular solute-binding protein -
  NQZ91_RS07110 (NQZ91_07110) - 1430492..1431781 (+) 1290 WP_105122414.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35415.79 Da        Isoelectric Point: 4.4753

>NTDB_id=615478 NQZ91_RS07095 WP_105160475.1 1426246..1427157(-) (comR) [Streptococcus suis strain DNS20]
MDLGQKIEQLRLEKGLSRPDFCGDESELTVRQLARIESGQSQPSIPKLEYIAQRLGIPAYSLMPDYKELPQGYLELKYKL
LREPIYNKVEVLDKQDGYIETIYNTYFEELPKTEQLICEAMQAMVDMVRTNQPDYAVALLTENLPLLMAKKVCDVNDLIL
IRLFFVQQTIGENTVSRVQNNFESISYLMKKLANSQTFVRLEDTFYLRDAIISGLACFELIEYYDDAPIYIDCLRGIMEE
TQDYQKKPLLFMLEWKAALKLEEDYEKAEKVYQSAKSFAQVIGNDYLAQKLAEEWQKDLKKYW

Nucleotide


Download         Length: 912 bp        

>NTDB_id=615478 NQZ91_RS07095 WP_105160475.1 1426246..1427157(-) (comR) [Streptococcus suis strain DNS20]
ATGGATTTAGGACAAAAAATCGAGCAACTGAGGCTAGAAAAGGGACTGAGCCGTCCAGATTTTTGTGGAGATGAATCCGA
GTTGACGGTACGGCAATTAGCTCGGATAGAAAGTGGTCAATCGCAGCCTTCTATACCTAAATTAGAGTACATTGCCCAGC
GTTTAGGCATTCCAGCCTATAGCCTGATGCCAGACTATAAGGAATTGCCACAAGGTTATTTGGAACTCAAGTACAAGTTG
TTGCGGGAGCCGATATATAATAAGGTCGAGGTGTTGGATAAACAGGATGGGTATATCGAAACCATATATAATACCTATTT
TGAAGAACTACCTAAGACTGAGCAGCTTATCTGTGAGGCTATGCAGGCTATGGTTGATATGGTGCGGACCAATCAACCAG
ATTATGCAGTAGCTCTATTGACAGAAAACTTACCACTTCTTATGGCAAAGAAAGTGTGTGATGTCAATGACTTGATTCTT
ATTCGGCTCTTTTTTGTCCAGCAAACAATAGGAGAGAATACAGTCAGTAGAGTTCAAAACAACTTTGAATCTATCTCGTA
TTTAATGAAAAAACTAGCCAACAGTCAGACATTTGTTCGATTAGAAGATACTTTTTATTTAAGAGATGCGATTATCTCAG
GGCTTGCCTGCTTTGAACTGATAGAATATTATGACGATGCCCCTATCTATATTGATTGTCTTCGTGGAATAATGGAAGAG
ACGCAAGATTATCAAAAGAAACCTCTCTTGTTTATGCTGGAATGGAAAGCGGCTTTGAAATTAGAGGAAGATTATGAAAA
AGCTGAAAAAGTCTACCAGTCAGCCAAATCGTTTGCTCAGGTCATTGGAAATGACTATCTGGCACAGAAATTAGCAGAGG
AGTGGCAGAAGGATTTGAAAAAATATTGGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(7-58)

ComR tetratricopeptide (ComR_TPR)

(70-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

38.87

99.34

0.386
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

36.913

98.35

0.363