Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   NQZ91_RS07040 Genome accession   NZ_CP102145
Coordinates   1414120..1416660 (-) Length   846 a.a.
NCBI ID   WP_257117216.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1409120..1421660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS07010 (NQZ91_07010) ruvA 1409234..1409824 (-) 591 WP_105122400.1 Holliday junction branch migration protein RuvA Machinery gene
  NQZ91_RS07015 (NQZ91_07015) hexB 1409831..1411780 (-) 1950 WP_257117212.1 DNA mismatch repair endonuclease MutL Machinery gene
  NQZ91_RS07020 (NQZ91_07020) - 1411906..1412082 (-) 177 WP_161942998.1 hypothetical protein -
  NQZ91_RS07025 (NQZ91_07025) - 1412127..1412573 (-) 447 WP_257117213.1 DUF3021 domain-containing protein -
  NQZ91_RS07030 (NQZ91_07030) - 1412570..1413013 (-) 444 WP_105110239.1 LytTR family DNA-binding domain-containing protein -
  NQZ91_RS07035 (NQZ91_07035) - 1413162..1414082 (-) 921 WP_257117215.1 magnesium transporter CorA family protein -
  NQZ91_RS07040 (NQZ91_07040) hexA 1414120..1416660 (-) 2541 WP_257117216.1 DNA mismatch repair protein MutS Machinery gene
  NQZ91_RS07045 (NQZ91_07045) argR 1416674..1417114 (-) 441 WP_105110242.1 arginine repressor -
  NQZ91_RS07050 (NQZ91_07050) argS 1417218..1418906 (+) 1689 WP_105160865.1 arginine--tRNA ligase -
  NQZ91_RS07055 (NQZ91_07055) - 1419357..1420769 (+) 1413 WP_257117218.1 SH3 domain-containing protein -
  NQZ91_RS07060 (NQZ91_07060) - 1420816..1421334 (-) 519 WP_105110245.1 hypothetical protein -
  NQZ91_RS07065 (NQZ91_07065) - 1421424..1421567 (+) 144 WP_172022956.1 hypothetical protein -

Sequence


Protein


Download         Length: 846 a.a.        Molecular weight: 94757.29 Da        Isoelectric Point: 4.9449

>NTDB_id=615476 NQZ91_RS07040 WP_257117216.1 1414120..1416660(-) (hexA) [Streptococcus suis strain DNS20]
MATEKISPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNADNPIPMAGVPYHAAQQYIDMLV
ELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGTVTDSSKMGADSNFLVAIERSGAHFALSYMDVATGQFFVTSLDDFAS
LCGEIRNLRAREVVIGFTLSEEEEQVFANQMNLLLSFEDEVADDVHLIDQSLTDLEKAAAGKLLSYLHRTQMRDLAHLQK
VVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLMDETKTAMGMRLLRTWIDRPLIDQGRIEARQAVVQVFLDYFF
ERSDLIEALKGVYDIERLASRVSFGKTLPKDLLQLSQTLGNVPAIKNILSQMGEPAMASLVQGLDPIPELHALISYAIDP
EANGPITDGNIIKTGFDEKLDQYRLVMREGAGWIAEIEAKERTASGINNLKIDYNKKDGYYFHVTNSNLGNVPAHFFRKA
TLKNSERYGTEELSKIEGQMLEARDKSANLEYEIFMRIRQEVEKYIGRLQKLARTIATIDVLQSFAVVAEQERLVCPTFT
EHRELTIDRGRHAVVEKVMGKQTYIPNSIHLDAETHMQLITGPNMSGKSTYMRQLAMIVIMAQMGSYVPADQAELPIFDA
IFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHEL
TELGQTLEHLENVHVSTLEQNGQVTFLHKIAPGPADKSYGIHVAKIAGMPEDLLKRADNILQQLENHASSSQSSQPNLVS
EPASGQLDLFAEISSHPVLDELQALDIHNMTPMEVMMVVAELKKKL

Nucleotide


Download         Length: 2541 bp        

>NTDB_id=615476 NQZ91_RS07040 WP_257117216.1 1414120..1416660(-) (hexA) [Streptococcus suis strain DNS20]
ATGGCAACAGAAAAAATTTCTCCAGGAATGCAGCAGTATCTGGATATTAAGGCACAATATCCAGATGCTTTTTTGCTTTT
CCGTATGGGAGACTTTTACGAGTTATTTTATGAAGATGCGGTCGAGGCGGCTCAGATTTTGGAGCTGTCTCTGACTAGTC
GCAATAAGAATGCGGACAATCCTATTCCCATGGCCGGTGTGCCTTATCATGCAGCCCAGCAATATATTGACATGTTGGTG
GAGCTGGGGCATAAGGTCGCCATTGCTGAGCAGATGGAGGATCCTAAGCAGGCTGTCGGTGTGGTCAAGCGTGAAGTAGT
TCAGGTCATCACTCCGGGGACGGTGACGGATTCCTCGAAAATGGGAGCCGACAGCAATTTCTTGGTTGCCATTGAGCGCA
GCGGGGCTCATTTTGCCCTGTCTTATATGGACGTGGCAACCGGACAATTTTTCGTGACTAGTTTGGATGATTTTGCTAGT
CTCTGCGGAGAAATACGCAATCTGCGGGCGCGTGAAGTTGTCATCGGCTTTACCCTTTCTGAAGAGGAAGAGCAGGTGTT
TGCCAATCAGATGAATCTGCTCCTGTCTTTTGAGGATGAGGTTGCAGATGATGTTCATCTGATTGACCAATCCTTGACGG
ACTTGGAGAAGGCTGCGGCAGGGAAATTGTTGTCTTATTTGCATAGGACCCAGATGCGAGATTTGGCGCATTTGCAAAAG
GTAGTCCACTATGAAATCAAGGATTATTTGCAGATGGATTATGCGACCAAGTCCAGTCTGGATTTGCTGGAAAATGGGCG
AACTGGCAAAAAGCATGGCAGTCTTTACTGGCTCATGGATGAGACCAAGACGGCTATGGGGATGCGGCTCTTGCGGACTT
GGATTGACCGTCCTTTGATTGATCAGGGGCGAATTGAGGCGCGGCAGGCAGTTGTGCAGGTCTTTTTGGATTATTTCTTT
GAGCGTAGCGACTTGATTGAGGCGCTGAAAGGGGTCTATGATATTGAGCGCTTGGCCAGCCGAGTATCCTTCGGGAAAAC
CTTGCCCAAGGATCTCTTGCAACTTTCTCAGACCTTGGGAAATGTGCCGGCTATCAAAAATATCTTGTCGCAGATGGGAG
AGCCTGCTATGGCTAGCTTGGTTCAGGGGCTGGATCCCATCCCAGAACTTCATGCGCTGATTAGCTATGCTATTGACCCA
GAGGCCAATGGACCGATTACCGATGGCAATATCATCAAGACGGGCTTTGATGAAAAGCTGGATCAGTATCGTCTGGTCAT
GCGTGAGGGTGCGGGCTGGATTGCGGAAATTGAGGCCAAGGAGCGGACGGCATCTGGTATAAATAATCTCAAGATTGATT
ACAATAAAAAAGACGGTTACTATTTCCATGTGACCAATTCCAATCTGGGCAATGTGCCAGCTCATTTTTTCCGTAAGGCG
ACGCTGAAAAATTCGGAGCGCTATGGGACGGAAGAATTATCCAAAATCGAAGGTCAGATGCTGGAGGCGCGTGACAAATC
AGCCAATCTGGAGTACGAGATTTTTATGCGCATCCGTCAAGAAGTGGAGAAATACATCGGTCGCCTGCAGAAATTGGCTC
GTACCATTGCGACTATTGATGTCCTGCAGTCTTTTGCGGTTGTGGCGGAGCAAGAGCGCTTGGTTTGTCCGACCTTTACG
GAGCACCGCGAATTGACCATTGACCGAGGTCGCCATGCCGTAGTGGAAAAGGTTATGGGTAAGCAGACCTATATTCCCAA
CTCAATCCATCTGGATGCGGAAACTCACATGCAGCTGATTACGGGGCCCAACATGTCTGGTAAATCGACCTATATGCGCC
AGCTAGCTATGATTGTTATCATGGCGCAGATGGGTTCCTATGTGCCGGCTGATCAGGCGGAATTGCCAATTTTTGATGCG
ATTTTCACTCGGATTGGTGCGGCGGATGATTTGGTCAGTGGGCAGTCGACCTTCATGGTAGAAATGATGGAGGCCAACAA
GGCCGTGCGTTTGGCGACAGACCGCTCGCTCATTCTCTTTGACGAGTTGGGGCGTGGGACAGCGACTTACGACGGTATGG
CTCTGGCCCAGTCCATTATTGAGTATATCCACGACAAGATTGGTGCTAAGACCTTATTTGCGACCCATTACCATGAATTG
ACCGAGCTAGGACAGACCTTGGAGCACTTGGAGAATGTCCATGTGTCGACCTTGGAGCAAAATGGTCAGGTGACCTTCCT
TCACAAGATTGCGCCAGGTCCTGCCGACAAGTCTTACGGTATCCATGTGGCCAAAATCGCAGGTATGCCAGAAGATTTGC
TCAAGCGGGCGGATAATATTTTGCAGCAGTTGGAAAATCATGCGTCGTCCAGTCAGTCTAGTCAGCCAAATCTAGTGAGT
GAACCAGCCTCGGGTCAGTTGGATTTGTTTGCAGAAATTAGCAGCCATCCTGTGTTGGATGAATTGCAGGCTCTGGACAT
CCACAATATGACCCCTATGGAGGTCATGATGGTGGTTGCAGAGTTGAAGAAGAAGCTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

73.286

100

0.733

  mutS Pseudomonas stutzeri strain ATCC 17587

37.442

100

0.381