Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SII_RS06975 Genome accession   NC_022237
Coordinates   1433419..1435377 (-) Length   652 a.a.
NCBI ID   WP_020999022.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428419..1440377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS06930 (SII_1364) rpmB 1428935..1429123 (-) 189 WP_003025909.1 50S ribosomal protein L28 -
  SII_RS06935 (SII_1365) - 1429258..1429920 (-) 663 WP_003073781.1 LiaF transmembrane domain-containing protein -
  SII_RS06940 (SII_1366) - 1429926..1430372 (-) 447 WP_003073783.1 LytTR family DNA-binding domain-containing protein -
  SII_RS06950 (SII_1368) - 1430810..1431691 (-) 882 WP_003073785.1 class II fructose-bisphosphate aldolase -
  SII_RS06960 (SII_1370) - 1432104..1432514 (-) 411 WP_020999021.1 GyrI-like domain-containing protein -
  SII_RS06965 - 1432640..1433131 (-) 492 Protein_1370 glutamine amidotransferase-related protein -
  SII_RS06975 (SII_1372) amiA 1433419..1435377 (-) 1959 WP_020999022.1 peptide ABC transporter substrate-binding protein Regulator
  SII_RS06980 (SII_1373) mraY 1435779..1436762 (-) 984 WP_003078417.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  SII_RS06985 (SII_1374) pbp2X 1436764..1439022 (-) 2259 WP_020999023.1 penicillin-binding protein PBP2X -
  SII_RS06990 (SII_1375) ftsL 1439026..1439343 (-) 318 WP_003070323.1 cell division protein FtsL -
  SII_RS06995 (SII_1376) rsmH 1439352..1440302 (-) 951 WP_020999024.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72536.02 Da        Isoelectric Point: 9.1519

>NTDB_id=61540 SII_RS06975 WP_020999022.1 1433419..1435377(-) (amiA) [Streptococcus intermedius C270]
MKSSKWIIATGVVLSAGILLAGCGKSSSSTSTYSYVYTQDSDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSKVGVKA
IDDYTVQYTLSRAETYWNSKTTNNILFPVNAAFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTEGAYSAARLYPNSSSFASVKKQYNNNIIYSLQDATSYYYNFNLNRQSYHHTSKKTDA
QKTATQEAVLNKAFRQAINFAYNRMSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDLVSSKLVKYGSEWSDMNLAD
AQDAYYNPAKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGKENVVIDIQQMSSDELNNIG
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLKNFGLEPGQENDKIKTVGLDTYTTMLEEANAETNETKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
KKAQDNYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=61540 SII_RS06975 WP_020999022.1 1433419..1435377(-) (amiA) [Streptococcus intermedius C270]
ATGAAATCATCAAAATGGATTATTGCAACGGGAGTTGTACTAAGTGCTGGAATTTTATTGGCTGGTTGTGGCAAGTCAAG
CTCTAGCACATCGACATATTCATATGTGTATACACAAGACTCAGATACGCTGAATTATTTGATGGCGAATCGAGCAACAA
CATCAGATGTTGTTACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGGAACTTAGTTCCAGCACTCGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACGTATACGTATAAATTACGTAAAGACGCGAAATGGTACACATCAGAAGGCGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTAACTGGTTTGAAATATGCTGCAGATAACAAATCCGAAGCTCTTTACC
TTGTACAAGACTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAAAAGTAGGTGTAAAAGCT
ATTGATGATTATACAGTACAGTATACTCTGAGTCGTGCAGAAACTTATTGGAATTCAAAAACAACCAATAACATCCTCTT
CCCAGTCAATGCAGCCTTCTTAAAATCCCAAGGAAAGAATTTTGGTTCTGTAAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCAAAAAATCCTCATTATTATGACAAAAAGAATGTT
CATTTAGACAATATAAAGTTGACATATTATGATGGATCGGACCAAGAAGCGCTTATTCGAAACTTTACTGAGGGTGCTTA
TAGTGCAGCTCGTCTTTATCCAAATAGTTCTAGTTTTGCTTCTGTTAAGAAACAGTATAATAACAATATCATCTATAGTT
TACAAGATGCGACCAGTTACTATTATAACTTTAACTTAAATCGTCAGTCTTATCACCATACATCTAAGAAAACAGATGCT
CAAAAAACTGCAACACAGGAAGCAGTACTCAATAAAGCATTTCGTCAAGCAATCAATTTCGCCTACAATCGAATGTCTTA
TGGTGCGCAAAGCAATGGGAAAGATGGAGCGACAAAAGTATTGCGGAATACACTTGTTCCACCAACGTTTGTTTCAATTG
GTGATAAAACATTTGGGGATCTCGTATCTTCCAAATTGGTGAAGTACGGTTCAGAATGGTCTGATATGAATTTGGCTGAT
GCACAGGATGCTTACTACAATCCAGCAAAGGCAAAAGCAAAATTTGCACAAGCAAAAGCAGAGTTGCAAGCTAAAGGAGT
TCAGTTCCCAATTCATTTGGATGTACCGGCTGATCAGACAAGTAAAATTGGCGTTCAATGGGAAAGTTCTATGAAACAAT
CCGTTGAGTCTGTTTTAGGAAAAGAGAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAACTGAACAACATTGGC
TACTTTGCTAATACTGCTGCTCAAAAAGATTATGATTTATACAATGGCGGATGGTCAGGGGACTATCAAGATCCATCAAC
TTATCTAGATACCTTGAATACAAAAAATGGTGGTAGTTTGAAGAACTTTGGCTTGGAACCTGGTCAAGAGAACGATAAGA
TAAAAACTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAGCGTTATGAG
AAATATGCTGAAGCGCAGGCGTGGTTAATTGATAGTGGGTTGACAATGCCAAATCTTTCTCTTGGAGGAACACCATCTGT
GACAAAGACAGTTCCGTTTAGCCGTTCATATTCTCTAGTAGGAATTAAGGGTGGTTCAAGCAACTACTTTAAATATGTTA
AGTTGCAAGATAAAATTGTGACGACCAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCTTCTAAT
AAAAAAGCACAAGATAACTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.578
  amiA3 Streptococcus thermophilus LMD-9

57.23

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

57.078

100

0.575

Multiple sequence alignment