Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIO31_RS08540 Genome accession   NZ_CP085086
Coordinates   1695822..1696316 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain Ssuis_MA6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1690822..1701316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS08525 - 1693550..1694494 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  LIO31_RS08530 - 1694510..1695166 (+) 657 WP_002939249.1 DUF1129 domain-containing protein -
  LIO31_RS08535 rpsR 1695550..1695789 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  LIO31_RS08540 ssbA 1695822..1696316 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  LIO31_RS08545 rpsF 1696328..1696618 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  LIO31_RS08550 - 1696790..1697779 (-) 990 WP_023371431.1 lipoate--protein ligase -
  LIO31_RS08555 - 1697909..1699099 (+) 1191 WP_023371435.1 DUF6688 family protein -
  LIO31_RS08560 lpdA 1699151..1700911 (-) 1761 WP_024383854.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=615236 LIO31_RS08540 WP_002942409.1 1695822..1696316(-) (ssbA) [Streptococcus suis strain Ssuis_MA6]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=615236 LIO31_RS08540 WP_002942409.1 1695822..1696316(-) (ssbA) [Streptococcus suis strain Ssuis_MA6]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366