Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   LIO34_RS07585 Genome accession   NZ_CP085085
Coordinates   1516394..1517398 (-) Length   334 a.a.
NCBI ID   WP_002935813.1    Uniprot ID   A0A0K2E7G3
Organism   Streptococcus suis strain Ssuis_MA8     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511394..1522398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS07570 - 1511421..1512734 (-) 1314 WP_009910256.1 glycosyltransferase family 4 protein -
  LIO34_RS07575 - 1512735..1513733 (-) 999 WP_002935816.1 glycosyltransferase family 4 protein -
  LIO34_RS07580 - 1514043..1515962 (+) 1920 WP_226964019.1 Spy0128 family protein -
  LIO34_RS07585 ccpA 1516394..1517398 (-) 1005 WP_002935813.1 catabolite control protein A Regulator
  LIO34_RS07590 - 1517609..1518694 (+) 1086 WP_002935811.1 Xaa-Pro peptidase family protein -
  LIO34_RS07595 tgt 1519027..1520169 (-) 1143 WP_002935810.1 tRNA guanosine(34) transglycosylase Tgt -
  LIO34_RS07600 - 1520623..1521465 (+) 843 WP_002935807.1 DUF975 family protein -
  LIO34_RS07605 - 1521760..1522197 (-) 438 WP_002935805.1 CoA-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36772.94 Da        Isoelectric Point: 5.5173

>NTDB_id=615180 LIO34_RS07585 WP_002935813.1 1516394..1517398(-) (ccpA) [Streptococcus suis strain Ssuis_MA8]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=615180 LIO34_RS07585 WP_002935813.1 1516394..1517398(-) (ccpA) [Streptococcus suis strain Ssuis_MA8]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCTTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTGAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGCGTCAATATTGACTACGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTTTATTGAATGGTGTCAGTGATATGGGCGTCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACTAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATATGATATTGGTGCAATTGCTATGCGCATGCTCACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E7G3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

80.18

99.701

0.799
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

99.701

0.793
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

59.215

99.102

0.587