Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LF296_RS17220 Genome accession   NZ_CP085083
Coordinates   3664438..3665874 (+) Length   478 a.a.
NCBI ID   WP_272655029.1    Uniprot ID   A0AAJ6P532
Organism   Acinetobacter vivianii strain KJ-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3659438..3670874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS17200 (LF296_17200) thrC 3659651..3660790 (+) 1140 WP_004656353.1 threonine synthase -
  LF296_RS17205 (LF296_17205) pbpG 3660917..3661978 (-) 1062 WP_123773889.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LF296_RS17210 (LF296_17210) - 3662189..3662824 (+) 636 WP_004773961.1 response regulator transcription factor GacA -
  LF296_RS17215 (LF296_17215) pilS 3662851..3664419 (+) 1569 WP_200046187.1 sensor histidine kinase Regulator
  LF296_RS17220 (LF296_17220) pilR 3664438..3665874 (+) 1437 WP_272655029.1 sigma-54-dependent transcriptional regulator Regulator
  LF296_RS17225 (LF296_17225) - 3665914..3667086 (-) 1173 WP_047431852.1 S41 family peptidase -
  LF296_RS17230 (LF296_17230) gpmI 3667096..3668640 (-) 1545 WP_272655030.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LF296_RS17235 (LF296_17235) lptG 3668764..3669834 (-) 1071 WP_272655031.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53678.68 Da        Isoelectric Point: 6.3270

>NTDB_id=615134 LF296_RS17220 WP_272655029.1 3664438..3665874(+) (pilR) [Acinetobacter vivianii strain KJ-1]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHIAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQMHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLEMLVQQGRFRQDLFFRIHVMDLVLPPLRERGQDILL
LANHFIQKISQEWEVSVKTLSSRAEQFLLQQYFPGNVRELRNIIERAMTLSDDESIDLAHLQTAPLRSSIAHPAPSFTNT
TSEEVETPQHSASPTMSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=615134 LF296_RS17220 WP_272655029.1 3664438..3665874(+) (pilR) [Acinetobacter vivianii strain KJ-1]
ATGGCAACAAAACAACCACTCGTCTTGCTCGTAGACGATGAAGAGGACTTATGTCTTTTAATGCAGATGACGCTTGCGCG
CATGGGCATCAAGACACATATCGCTTATCGTGTCGAACAGGCAAAAAAATTCTTTACTGAGTTCCAGTATGATGCATGCT
TAACAGATTTAAACCTGCCAGATGGTAACGGTTTAGATCTGGTCAAACATGTGACCCAAAACTATCCAAACACGCCGATT
GCCGTTCTAACGGCCTATGGCAACATGGACATTGCAATCGCAGCACTCAAAGCAGGTGCGTTTGATTTTGTCAGCAAACC
CGTGAATCAAATGCACTTGGATCAGTTGATCCAGAAAGCTTTGAATCGACCACAGCCTGAACAGGAAGCTGCTGAAACGG
CTTTAGAAAATAAACTTCTGATTGGACGTTCAGCACCGATCCAGCAACTGCGTATTGCTTTAAAGAAGATTGCGCGCTCA
CAGGCGCCTGTATTCATTACAGGTGAATCAGGCACAGGTAAAGAAGTGGTTGCCAATCTGGTGCATCGTTTAAGTAACCG
TAGCGAAGGGCCTTTTATTGCCATTAACTGCGGTGCGATTCCAACTGAATTGATGGAAAGCGAGTTATTTGGACACAAGA
AAGGCAGCTTCACTGGTGCAACACAGGATAAGCAAGGCTTAATTCTTTCTGCGCACGGCGGTAGTTTATTTCTAGATGAA
ATTGCAGAATTGCCTTTAAATATGCAGGTCAAATTACTGCGTGCTGTACAGGAAAAGAAAATTCGCCCTGTCGGTTCAGA
TCAGGAAATTGATGTTGATTTCCGTGTGATCAGTGCCAGCCATCAAGATCTTGAAATGCTCGTCCAACAAGGTCGATTCC
GACAAGATCTGTTCTTCCGTATTCATGTCATGGATCTGGTGTTGCCGCCATTACGTGAGCGCGGTCAGGATATTCTGCTA
CTGGCCAATCATTTTATTCAAAAGATTAGTCAGGAATGGGAAGTCTCGGTTAAAACGCTTTCCTCTCGTGCAGAGCAGTT
CTTATTGCAGCAATATTTCCCAGGAAATGTGCGTGAACTGCGCAATATCATTGAACGTGCAATGACACTAAGCGATGATG
AATCGATTGATCTGGCCCATTTGCAGACGGCTCCATTACGCAGCTCGATTGCACATCCAGCGCCTTCATTTACCAATACG
ACCTCAGAAGAAGTGGAAACTCCACAACATTCTGCTAGCCCAACAATGAGTTCGAAGAAGCTTCCACCTGAAGGTTTAGA
ACGCTATTTAGAAAATATTGAAAAAGAAATTCTTCTAAATGCCCTGAATCTGACCCATTGGAATCGCACTTTAGCGGCGA
AAAAGTTGGGTATGACCTTCCGTTCTTTACGCTATCGCTTGAAAAAGTTTGGTTTAGATACCGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

82.845

100

0.828
  pilR Pseudomonas aeruginosa PAK

49.356

97.49

0.481