Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LF296_RS17215 Genome accession   NZ_CP085083
Coordinates   3662851..3664419 (+) Length   522 a.a.
NCBI ID   WP_200046187.1    Uniprot ID   A0AAJ6P524
Organism   Acinetobacter vivianii strain KJ-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3657851..3669419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF296_RS17195 (LF296_17195) - 3658242..3659543 (+) 1302 WP_004773963.1 homoserine dehydrogenase -
  LF296_RS17200 (LF296_17200) thrC 3659651..3660790 (+) 1140 WP_004656353.1 threonine synthase -
  LF296_RS17205 (LF296_17205) pbpG 3660917..3661978 (-) 1062 WP_123773889.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  LF296_RS17210 (LF296_17210) - 3662189..3662824 (+) 636 WP_004773961.1 response regulator transcription factor GacA -
  LF296_RS17215 (LF296_17215) pilS 3662851..3664419 (+) 1569 WP_200046187.1 sensor histidine kinase Regulator
  LF296_RS17220 (LF296_17220) pilR 3664438..3665874 (+) 1437 WP_272655029.1 sigma-54-dependent transcriptional regulator Regulator
  LF296_RS17225 (LF296_17225) - 3665914..3667086 (-) 1173 WP_047431852.1 S41 family peptidase -
  LF296_RS17230 (LF296_17230) gpmI 3667096..3668640 (-) 1545 WP_272655030.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59195.34 Da        Isoelectric Point: 6.5019

>NTDB_id=615133 LF296_RS17215 WP_200046187.1 3662851..3664419(+) (pilS) [Acinetobacter vivianii strain KJ-1]
MLGKIASSVSQTVYRLGVWYSGYRLIIAVSLLLIYLLTAEQLSANYIYPALYFYTLIAYITLNIIQLFILHLVPVQVSRQ
LIVIFLIDVICLSLITFSSGGPNLQLSLLYVIIIFSSAILLNSQLSLIITLFAVIMVVYQRFLGDFFDVINLTHLGNSVF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIYLPVSLE
KTPLIKLQPDLFELIKFSDLKDGEEFSFESQQSPYTVHVRVKHLIVPEQALVLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAHQQEMLSRMISKQAKRIDSIVQDTLAMARNRPTEAQPIQLTPFFESLLNEDLADAK
QMIQLKLAEQTVIVFDEKQLRQVLINLIRNALRHNATDAPFIEVDVHEKEGRICIDVIDFGMGVSKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYIERQQGACFRMECSKFID

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=615133 LF296_RS17215 WP_200046187.1 3662851..3664419(+) (pilS) [Acinetobacter vivianii strain KJ-1]
ATGTTAGGGAAAATTGCATCATCGGTCTCTCAGACCGTCTATCGACTGGGCGTTTGGTATAGCGGCTATCGGCTGATTAT
TGCCGTTAGCCTGCTGTTGATTTATTTATTGACCGCCGAGCAATTAAGCGCCAATTATATTTATCCAGCCTTATATTTTT
ATACGCTGATCGCGTATATCACACTAAATATCATTCAGCTTTTTATCTTGCACTTAGTCCCTGTACAGGTGTCCAGACAG
CTGATCGTTATCTTCCTGATTGATGTCATCTGCTTAAGTTTAATCACATTCTCATCTGGTGGGCCAAACCTGCAACTCAG
CTTGCTGTATGTCATCATTATTTTCTCCTCAGCCATTTTATTAAATTCACAGCTATCACTGATCATTACCCTGTTTGCCG
TCATCATGGTGGTATACCAGCGCTTTTTAGGTGATTTTTTTGATGTAATCAACTTAACTCATCTCGGCAATAGTGTTTTT
CTGGCCTTTTTATTTTTTGTTGTGCATGCCATTGGCCGGATTGCAGTCCAACGTTTTAAAATTTTAGAAACCCTTACTTT
CCATCAATCGATTGAAATTCATCAGCTGCAAAATATTAACCGTTATATTCTCGAGCAAATTGAAGACGGTTATTTGGTAC
TGGATGAAAGTAATCATATTGTCTTGACCAACCCGGCAGCCAATACATTACTGGGTATTTATCTACCTGTTTCTCTTGAA
AAAACACCATTAATCAAGTTACAACCTGATCTATTTGAACTGATTAAATTTAGTGATTTAAAGGACGGTGAAGAGTTTAG
TTTTGAATCGCAACAAAGCCCGTATACAGTTCATGTTCGAGTCAAACATTTGATTGTGCCCGAGCAGGCACTGGTCTTGT
TGATCTTAAAAGACGCACAAAAATTAACCCAGCAGGTACAACAACTCAAGCTGGCAGCATTGGGACAACTTTCTGCCAGT
ATTGCCCATGAAATTCGCAATCCATTGGCCGCAATTGTACAGGCCAATGAACTCCTAAAAGACAGTGATGCACATCAGCA
AGAAATGCTGTCACGGATGATTAGCAAGCAAGCCAAACGCATTGACAGCATTGTTCAAGATACTTTAGCGATGGCTCGTA
ACAGACCAACAGAAGCACAACCCATCCAGCTCACCCCGTTCTTTGAAAGTTTATTGAATGAAGATCTGGCTGACGCAAAA
CAGATGATCCAGCTAAAACTAGCAGAACAGACTGTGATCGTATTTGATGAAAAACAATTACGTCAGGTACTAATTAATCT
AATCCGTAATGCGTTGCGCCATAACGCAACAGACGCCCCTTTTATCGAAGTGGATGTGCATGAAAAAGAAGGTCGAATCT
GCATTGATGTCATCGATTTTGGGATGGGTGTCTCAAAACGGGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCACACATTTTGTGAGGCGAATCATGCAAAGCTCACCTATATAGAGCG
ACAACAAGGAGCATGTTTCAGGATGGAATGCTCAAAATTCATAGATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)

PAS fold (PAS)

(203-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.43

98.084

0.642