Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NQZ98_RS10430 Genome accession   NZ_CP102135
Coordinates   2055989..2057959 (-) Length   656 a.a.
NCBI ID   WP_024389837.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050989..2062959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS10400 (NQZ98_10400) - 2051290..2051823 (-) 534 WP_024399695.1 hypothetical protein -
  NQZ98_RS10405 (NQZ98_10405) - 2052150..2052878 (-) 729 WP_171997148.1 metallophosphoesterase -
  NQZ98_RS10410 (NQZ98_10410) - 2052944..2054293 (-) 1350 WP_044754437.1 glucose-6-phosphate isomerase -
  NQZ98_RS10415 (NQZ98_10415) - 2054375..2054917 (-) 543 WP_024389839.1 hypothetical protein -
  NQZ98_RS10425 (NQZ98_10425) tadA 2055187..2055708 (-) 522 WP_024389838.1 tRNA adenosine(34) deaminase TadA -
  NQZ98_RS10430 (NQZ98_10430) recP/tkt 2055989..2057959 (-) 1971 WP_024389837.1 transketolase Machinery gene
  NQZ98_RS10435 (NQZ98_10435) ulaG 2058171..2059262 (-) 1092 WP_002938500.1 L-ascorbate 6-phosphate lactonase -
  NQZ98_RS10440 (NQZ98_10440) - 2059372..2061060 (-) 1689 WP_079394059.1 transcription antiterminator -
  NQZ98_RS10445 (NQZ98_10445) - 2061185..2061802 (-) 618 WP_012775380.1 hypothetical protein -
  NQZ98_RS10450 (NQZ98_10450) - 2061887..2062603 (-) 717 WP_024384342.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70745.62 Da        Isoelectric Point: 4.8166

>NTDB_id=614837 NQZ98_RS10430 WP_024389837.1 2055989..2057959(-) (recP/tkt) [Streptococcus suis strain M106471_S40]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFED
VTMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKVAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYGPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFNKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=614837 NQZ98_RS10430 WP_024389837.1 2055989..2057959(-) (recP/tkt) [Streptococcus suis strain M106471_S40]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAACTTCGTATCAACCCAGCTCAGCCAAACTGGGTGA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGCTCCTCTACGGACTTCTTCATTTGTCAGGATTTGAAGAT
GTCACTATGGATGAAATCAAGAACTTCCGTCAGTGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCACACAGCTGG
TGTAGATGCAACAACAGGTCCTCTTGGACAAGGTATCTCAACTGCGACAGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGCGATGGTTTCCCAATCTTTGACCACTATACCTACGTAATCTGTGGTGATGGCGACTTGATGGAGGGT
GTTTCAGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGATTCCTTCACAGAAGATGTGCGTGCTCGTTACAATGCTTACGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGTAGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGTTCGCCAAACAAACAAGGTACAAATGCTGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCACTTGACTGGAACTATGGTCCATTTGAAATTCCAGCTGAAGTCTATGCGGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTGAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTGGCTGCAGAAGTAACAGCTATCTTGGAAGGTCGTGATGTAGTCGAAATCAAGCCAGAAGACTTCCCGGTTTACGAAAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCCCTCAACGCAGCGGCTAAAGTATTGCCAACTTTCTTAGGTG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTACATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCACTCAACCGC
AATATTCAGTTCGGTGTGCGTGAATTTGCCATGGGAACTATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTCGTCTTCTCAGACTATGTAAAAGCAGCAGTTCGTTTGTCAGCTCTTCAAGGACTTCCAGTGACTT
ATGTCTTCACTCATGACTCAATCGCAGTCGGTGAAGATGGTCCAACTCACGAGCCGATTGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAATGTTTTCCGTCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACCAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACAGTTGAGGAAGGAACCGACTTTAACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGTTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTTAAA
GCTGCCAAAGAACTAGAAGCAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCCCAAGA
TGCTGCCTACAAGGAAGAAATCCTTCCAAATGCCATCCGTCGTCGTTTGGCTATCGAAATGGGTGCTACTCAAAGCTGGT
ACAAGTATGTCGGCCTTGACGGTAAAGTTCTCGGTATTGACACATTTGGTGCATCAGCTCCAGCCCAAACAGTTATTGAC
AACTATGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(537-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.25

100

0.813