Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   LG951_RS15535 Genome accession   NZ_CP085037
Coordinates   2967600..2969891 (-) Length   763 a.a.
NCBI ID   WP_106036183.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 2962600..2974891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS15495 (LG951_15495) - 2962989..2963420 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  LG951_RS15500 (LG951_15500) - 2963420..2963761 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  LG951_RS15505 (LG951_15505) - 2963754..2965232 (+) 1479 WP_034620106.1 Na+/H+ antiporter subunit D -
  LG951_RS15510 (LG951_15510) - 2965239..2965718 (+) 480 WP_044140819.1 Na+/H+ antiporter subunit E -
  LG951_RS15515 (LG951_15515) - 2965718..2965999 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  LG951_RS15520 (LG951_15520) mnhG 2965983..2966357 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  LG951_RS15525 (LG951_15525) - 2966465..2966854 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  LG951_RS15530 (LG951_15530) comA 2966878..2967519 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  LG951_RS15535 (LG951_15535) comP 2967600..2969891 (-) 2292 WP_106036183.1 ATP-binding protein Regulator
  LG951_RS15540 (LG951_15540) comX 2969898..2970077 (-) 180 WP_034620107.1 competence pheromone ComX -
  LG951_RS15545 (LG951_15545) - 2970055..2970978 (-) 924 WP_003212977.1 polyprenyl synthetase family protein -
  LG951_RS15550 (LG951_15550) degQ 2971130..2971270 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  LG951_RS15555 (LG951_15555) - 2971776..2972129 (+) 354 WP_034620108.1 hypothetical protein -
  LG951_RS15560 (LG951_15560) - 2972160..2973386 (-) 1227 WP_106032245.1 EAL and HDOD domain-containing protein -

Sequence


Protein


Download         Length: 763 a.a.        Molecular weight: 88169.51 Da        Isoelectric Point: 7.2088

>NTDB_id=614836 LG951_RS15535 WP_106036183.1 2967600..2969891(-) (comP) [Bacillus pumilus strain BIM B-171]
MQKFYSKLTVILIILSFIYVIYISYINVFNIFVGAVVSVNSDGQLEIEDVVDFTDSYYAGVRKGDIILEVNGNKEPTEEV
RRGYLANVKSLVVDRHGDEIVIENVRLLSQENLFIYLIPIIFYSICLFCIFMILKINKSRKKESAYILALFLLAVAVAYV
SSGGSGKGEYISGFIVISTMTCVPPLYMHFMYQYLKELGTKIISVRVLLSLYAVPFINLVLEIYFKNMVLAAFNLLSFFA
LAFITIIITFRSAKRWKGTEIGNVLSAFGLVLITSFSPFMLFFIIPYFFHKYFISPYILASFALLIPFFLVYQFMSNKLY
NVDFFMGRIKYYCLLAITPTIVVVIIFDFIQKPSANFYTVKFTIITYILMLTVFYFKEIIDFRFRLKRFSEKHNYQDSVF
KFTQLIREASSLHQVLYHLKYTILEVLVVNKAFVLEVKPDGQIEEIDESSGDSELWKKYVDQFQELLGEVGKIVGLDKGF
MMKIGERGGHSFVICCLSNLRIPKLTRDEISWLKTLAFYTSVSLENVVKIEELMEHLEDLKQREANPAWLKKVMFAMEEK
QRSDLARDLHDSVLQDLISLKRQSEMFLTNFQNDQCPTSIEQSLISWNEQMSKVIQTTRETCHELRPQLLYDLGLVKAIS
KLTSQIQEEAPFHIRLNTTRFDKELDIDIDSQLNIYRIVQELLSNALKHSQASQVLVMLICIKDQVVLHYEDDGVGFDAR
HLDQHTMSMGLSGIRERVKALNGKLHIHTAPEKGLKVKIEMEL

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=614836 LG951_RS15535 WP_106036183.1 2967600..2969891(-) (comP) [Bacillus pumilus strain BIM B-171]
ATGCAAAAATTTTACTCGAAATTAACTGTTATTTTAATCATCCTTAGCTTCATTTATGTGATTTATATTTCTTACATCAA
TGTGTTTAATATCTTTGTAGGAGCAGTCGTTTCGGTGAATAGTGACGGACAACTTGAAATAGAGGATGTTGTTGATTTTA
CAGACAGTTATTATGCTGGTGTTAGAAAAGGCGATATCATCCTTGAAGTGAACGGTAATAAAGAACCAACCGAAGAAGTA
AGAAGAGGTTATTTAGCAAACGTCAAAAGTTTAGTTGTTGATAGACATGGTGATGAAATTGTCATAGAGAATGTGAGGTT
ATTAAGTCAAGAAAATCTATTTATCTACTTAATACCGATCATTTTTTATTCAATCTGTCTATTTTGTATATTTATGATTT
TAAAAATCAACAAATCTAGGAAAAAAGAGTCTGCATATATTCTTGCCCTTTTTTTATTGGCTGTTGCTGTAGCATATGTC
AGTTCTGGTGGTTCTGGTAAAGGTGAGTATATTAGTGGTTTTATCGTCATTTCTACGATGACTTGTGTACCTCCTTTATA
TATGCACTTTATGTATCAGTATTTGAAGGAATTGGGTACGAAAATTATTAGTGTACGTGTGCTTCTTTCTTTGTATGCAG
TTCCATTTATAAATCTTGTTTTAGAAATTTATTTTAAAAATATGGTTTTAGCTGCTTTCAACTTACTTTCGTTTTTTGCA
CTTGCATTTATTACGATTATTATCACATTCAGATCAGCTAAAAGGTGGAAAGGCACGGAAATTGGTAATGTCCTTAGTGC
ATTTGGACTTGTCTTAATCACGTCATTCAGTCCTTTTATGCTGTTCTTTATCATTCCATATTTTTTTCATAAGTATTTTA
TTTCGCCTTATATTCTTGCTTCGTTTGCATTATTAATTCCGTTTTTCTTAGTCTATCAATTTATGTCAAATAAATTGTAT
AATGTGGATTTCTTTATGGGGAGGATCAAATATTACTGCCTTTTAGCCATTACACCAACTATAGTAGTGGTTATCATATT
TGATTTCATTCAAAAACCTAGTGCTAACTTTTATACAGTGAAGTTTACGATTATCACGTATATTCTTATGTTGACAGTCT
TTTACTTTAAAGAAATCATCGATTTTCGCTTTCGCCTGAAGCGTTTTTCAGAGAAGCATAATTATCAGGACAGTGTGTTT
AAATTTACGCAGCTCATTCGCGAGGCATCATCACTTCACCAAGTGTTATATCATTTGAAATACACCATTTTAGAAGTGCT
AGTTGTTAATAAAGCCTTTGTGCTTGAAGTGAAGCCAGATGGACAAATAGAAGAGATTGATGAATCTTCAGGTGATAGTG
AGCTATGGAAAAAGTATGTAGACCAATTTCAAGAATTATTAGGTGAAGTTGGAAAAATCGTCGGGCTTGATAAAGGGTTC
ATGATGAAAATTGGCGAGCGGGGCGGTCACTCTTTTGTGATTTGCTGTTTATCTAATTTACGGATACCAAAATTGACGCG
TGATGAGATTTCTTGGCTGAAAACATTGGCATTTTATACAAGTGTCAGTTTAGAAAATGTCGTCAAGATTGAAGAATTGA
TGGAGCATCTTGAAGATTTGAAGCAGCGTGAAGCGAATCCAGCTTGGCTGAAAAAAGTCATGTTTGCGATGGAAGAAAAG
CAGCGATCAGATTTAGCAAGAGATCTTCATGATTCTGTGCTGCAGGATTTGATATCACTGAAAAGGCAGTCAGAGATGTT
TTTAACGAATTTCCAAAATGACCAATGCCCGACTTCTATTGAACAATCGCTTATCTCATGGAATGAGCAAATGTCTAAGG
TGATTCAAACGACGAGAGAAACGTGTCATGAACTTCGGCCGCAGCTGCTGTACGATTTAGGTTTAGTGAAGGCGATATCG
AAGCTGACTTCTCAAATTCAGGAGGAAGCACCATTTCATATTCGGCTGAATACGACACGCTTTGATAAGGAGCTGGACAT
TGATATTGACTCCCAGCTCAATATTTACCGAATTGTTCAGGAGCTGTTATCCAATGCCTTGAAACATTCTCAAGCCAGCC
AAGTGCTCGTAATGCTGATTTGTATTAAAGATCAGGTTGTTCTTCACTACGAGGATGATGGAGTTGGGTTTGACGCAAGA
CATCTTGATCAGCACACCATGAGCATGGGCCTTTCTGGCATCAGAGAACGAGTCAAGGCGTTAAATGGGAAGCTTCACAT
TCACACAGCACCTGAAAAAGGGCTGAAGGTGAAAATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

48.843

100

0.498