Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NQZ98_RS10365 Genome accession   NZ_CP102135
Coordinates   2045391..2045840 (-) Length   149 a.a.
NCBI ID   WP_024384183.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2040391..2050840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS10350 (NQZ98_10350) - 2041024..2041818 (+) 795 WP_024388513.1 formate/nitrite transporter family protein -
  NQZ98_RS10355 (NQZ98_10355) - 2041907..2043691 (-) 1785 WP_024399876.1 ABC transporter ATP-binding protein -
  NQZ98_RS10360 (NQZ98_10360) - 2043692..2045398 (-) 1707 WP_171997153.1 ABC transporter ATP-binding protein -
  NQZ98_RS10365 (NQZ98_10365) rcrR 2045391..2045840 (-) 450 WP_024384183.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NQZ98_RS10370 (NQZ98_10370) - 2046062..2047078 (+) 1017 WP_014638751.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NQZ98_RS10375 (NQZ98_10375) galU 2047124..2048026 (+) 903 WP_171997152.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NQZ98_RS10380 (NQZ98_10380) - 2048053..2048730 (-) 678 WP_171997151.1 rhomboid family intramembrane serine protease -
  NQZ98_RS10385 (NQZ98_10385) - 2048714..2049256 (-) 543 WP_171997150.1 5-formyltetrahydrofolate cyclo-ligase -
  NQZ98_RS10390 (NQZ98_10390) - 2049298..2050425 (-) 1128 WP_171997149.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17575.05 Da        Isoelectric Point: 7.1873

>NTDB_id=614836 NQZ98_RS10365 WP_024384183.1 2045391..2045840(-) (rcrR) [Streptococcus suis strain M106471_S40]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=614836 NQZ98_RS10365 WP_024384183.1 2045391..2045840(-) (rcrR) [Streptococcus suis strain M106471_S40]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTACCTTCTCAGTTTGACAGACGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAGTTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGATAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416