Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LG951_RS15530 Genome accession   NZ_CP085037
Coordinates   2966878..2967519 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain BIM B-171     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2961878..2972519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS15495 (LG951_15495) - 2962989..2963420 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  LG951_RS15500 (LG951_15500) - 2963420..2963761 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  LG951_RS15505 (LG951_15505) - 2963754..2965232 (+) 1479 WP_034620106.1 Na+/H+ antiporter subunit D -
  LG951_RS15510 (LG951_15510) - 2965239..2965718 (+) 480 WP_044140819.1 Na+/H+ antiporter subunit E -
  LG951_RS15515 (LG951_15515) - 2965718..2965999 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  LG951_RS15520 (LG951_15520) mnhG 2965983..2966357 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  LG951_RS15525 (LG951_15525) - 2966465..2966854 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  LG951_RS15530 (LG951_15530) comA 2966878..2967519 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  LG951_RS15535 (LG951_15535) comP 2967600..2969891 (-) 2292 WP_106036183.1 ATP-binding protein Regulator
  LG951_RS15540 (LG951_15540) comX 2969898..2970077 (-) 180 WP_034620107.1 competence pheromone ComX -
  LG951_RS15545 (LG951_15545) - 2970055..2970978 (-) 924 WP_003212977.1 polyprenyl synthetase family protein -
  LG951_RS15550 (LG951_15550) degQ 2971130..2971270 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  LG951_RS15555 (LG951_15555) - 2971776..2972129 (+) 354 WP_034620108.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=614835 LG951_RS15530 WP_003213500.1 2966878..2967519(-) (comA) [Bacillus pumilus strain BIM B-171]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=614835 LG951_RS15530 WP_003213500.1 2966878..2967519(-) (comA) [Bacillus pumilus strain BIM B-171]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGTAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714