Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LG319_RS07515 Genome accession   NZ_CP085027
Coordinates   1510789..1511655 (-) Length   288 a.a.
NCBI ID   WP_037551650.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1505789..1516655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS07500 (LG319_07465) xerC 1506145..1507008 (-) 864 WP_276312366.1 tyrosine recombinase XerC -
  LG319_RS07505 (LG319_07470) trmFO 1507210..1508517 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LG319_RS07510 (LG319_07475) topA 1508541..1510610 (-) 2070 WP_037537327.1 type I DNA topoisomerase -
  LG319_RS07515 (LG319_07480) dprA 1510789..1511655 (-) 867 WP_037551650.1 DNA-processing protein DprA Machinery gene
  LG319_RS07520 (LG319_07485) - 1511874..1512822 (-) 949 Protein_1445 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  LG319_RS07525 (LG319_07490) - 1512853..1513096 (-) 244 Protein_1446 cell wall hydrolase -
  LG319_RS07530 (LG319_07495) sucD 1513545..1514450 (-) 906 WP_037551652.1 succinate--CoA ligase subunit alpha -
  LG319_RS07535 (LG319_07500) sucC 1514472..1515638 (-) 1167 WP_053024898.1 ADP-forming succinate--CoA ligase subunit beta -
  LG319_RS07540 (LG319_07505) - 1515750..1516517 (-) 768 WP_037551656.1 ribonuclease HII -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33107.08 Da        Isoelectric Point: 9.2746

>NTDB_id=614731 LG319_RS07515 WP_037551650.1 1510789..1511655(-) (dprA) [Staphylococcus haemolyticus strain SLM-175]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLTSSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPLTSVRRYHFPQRNRLISGLSKGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=614731 LG319_RS07515 WP_037551650.1 1510789..1511655(-) (dprA) [Staphylococcus haemolyticus strain SLM-175]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGCTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCG
TTTATTAACATCCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATAGCACATCATTTT
GCTATAGAGTATCAATTACCTACAATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCACTCACTAGTGTTAGGCGATATCACTTTCCAC
AGCGCAATCGTTTGATAAGCGGTCTTTCAAAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACAAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.281

98.958

0.517
  dprA Staphylococcus aureus N315

52.281

98.958

0.517
  dprA Glaesserella parasuis strain SC1401

36.749

98.264

0.361