Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LG319_RS04185 Genome accession   NZ_CP085027
Coordinates   843715..844431 (-) Length   238 a.a.
NCBI ID   WP_053025128.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 838715..849431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS04165 (LG319_04150) - 838755..839999 (+) 1245 WP_053025131.1 ammonium transporter -
  LG319_RS04170 (LG319_04155) - 840100..841059 (+) 960 WP_053025130.1 LacI family DNA-binding transcriptional regulator -
  LG319_RS04175 (LG319_04160) - 841144..842628 (+) 1485 WP_053025129.1 sucrose-6-phosphate hydrolase -
  LG319_RS04180 (LG319_04165) - 842632..843597 (+) 966 WP_011275300.1 carbohydrate kinase -
  LG319_RS04185 (LG319_04170) agrA 843715..844431 (-) 717 WP_053025128.1 quorum-sensing response regulator AgrA Regulator
  LG319_RS04190 (LG319_04175) agrC 844450..845733 (-) 1284 WP_053025127.1 quorum-sensing sensor histidine kinase AgrC -
  LG319_RS04195 (LG319_04180) agrD 845765..845902 (-) 138 WP_037551251.1 cyclic lactone autoinducer peptide AgrD -
  LG319_RS04200 (LG319_04185) - 845905..846471 (-) 567 WP_053025126.1 accessory gene regulator AgrB -
  LG319_RS04205 (LG319_04190) - 847200..847985 (-) 786 WP_053025125.1 carbon-nitrogen family hydrolase -
  LG319_RS04210 (LG319_04195) - 848180..848803 (-) 624 WP_053025124.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27829.79 Da        Isoelectric Point: 5.2189

>NTDB_id=614716 LG319_RS04185 WP_053025128.1 843715..844431(-) (agrA) [Staphylococcus haemolyticus strain SLM-175]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEVIEKSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPSQLQSRIIDCLETAHTRLKLLSKESTVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIVHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERIVNFKNGEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=614716 LG319_RS04185 WP_053025128.1 843715..844431(-) (agrA) [Staphylococcus haemolyticus strain SLM-175]
ATGAAAATATTCATTTGTGAAGATGATGTAAAACAACGCGAAAATATGGTTTCAATTATTAATAATTACATTATGATTGA
AGAAAAACCTATGGAGATTGCGCTTGCAACAGACGATCCTTATGAAGTCATTGAAAAATCTAAAGAGATGAATGATGTCG
GATGTTACTTTCTAGATATTCAATTAGAGGCTGATATCAACGGTATTAAATTAGGTAGTGAAATTCGTAAGTATGACCCT
ATTGGAAATATCATATTCGTTACAAGTCATAGTGAGTTAACATACCTAACCTTTGTTTACAAAGTGTCAGCAATGGATTT
TATCTTTAAAGATGATCCAAGCCAATTACAGTCCAGAATTATTGATTGCTTAGAAACTGCGCACACTCGCTTAAAATTAT
TATCTAAAGAAAGTACTGTTGAAACGATTGAATTGAAACGAGGAAGTAATTCAATTTATGTTCAATATGATGACGTAATG
TTTTTCGAATCATCTACAAAATCACATCGATTAATCGTACATTTAGATAATCGTCAAATTGAGTTCTATGGCAATTTAAA
AGAACTTGCACAACTTGATGAGCGGTTCTTTAGATGTCACAACAGCTTCGTTGTTAACAGACATAATATTGAATCCATAG
ATTCAAAAGAACGTATTGTCAATTTTAAAAACGGTGAGCACTGTTTTGCTTCGGTTCGTAATGTTAAAAAAATATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874