Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NQZ84_RS07300 Genome accession   NZ_CP102094
Coordinates   1480242..1480838 (-) Length   198 a.a.
NCBI ID   WP_024399909.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475242..1485838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS07280 (NQZ84_07280) - 1475913..1476989 (-) 1077 Protein_1396 ABC transporter permease -
  NQZ84_RS07285 (NQZ84_07285) - 1476991..1477371 (-) 381 WP_024399911.1 OsmC family protein -
  NQZ84_RS07290 (NQZ84_07290) - 1477680..1478852 (+) 1173 WP_044686666.1 IS110 family transposase -
  NQZ84_RS07295 (NQZ84_07295) - 1479091..1480137 (-) 1047 WP_024399910.1 D-alanine--D-alanine ligase -
  NQZ84_RS07300 (NQZ84_07300) recR 1480242..1480838 (-) 597 WP_024399909.1 recombination mediator RecR Machinery gene
  NQZ84_RS07305 (NQZ84_07305) pbp2b 1480847..1482916 (-) 2070 WP_257049620.1 penicillin-binding protein PBP2B -
  NQZ84_RS07310 (NQZ84_07310) vga(F) 1483008..1484393 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  NQZ84_RS07315 (NQZ84_07315) vicX 1484651..1485454 (-) 804 WP_014637679.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21607.71 Da        Isoelectric Point: 4.5456

>NTDB_id=614716 NQZ84_RS07300 WP_024399909.1 1480242..1480838(-) (recR) [Streptococcus suis strain 12RC1]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSVCGNLTDQDPCGICQDSSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDGINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=614716 NQZ84_RS07300 WP_024399909.1 1480242..1480838(-) (recR) [Streptococcus suis strain 12RC1]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTGGTCAATGAATTTGCAAAAAATCTCTTGGCTGCCAAGAGGGATT
TGACCTATTGTTCGGTTTGTGGCAATCTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATAGCAGTCGTGACCAGTCG
ACTATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGGTATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATAAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49