Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG295_RS13115 Genome accession   NZ_CP085024
Coordinates   2743852..2744367 (-) Length   171 a.a.
NCBI ID   WP_039069219.1    Uniprot ID   A0A418IFQ1
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2738852..2749367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS13115 (LG295_13105) ssbA 2743852..2744367 (-) 516 WP_039069219.1 single-stranded DNA-binding protein Machinery gene
  LG295_RS13120 (LG295_13110) rpsF 2744386..2744691 (-) 306 WP_107531107.1 30S ribosomal protein S6 -
  LG295_RS13125 (LG295_13115) - 2745119..2745925 (+) 807 WP_107557801.1 GH25 family lysozyme -
  LG295_RS13130 (LG295_13120) ychF 2746075..2747172 (-) 1098 WP_107554731.1 redox-regulated ATPase YchF -
  LG295_RS13135 (LG295_13125) - 2747172..2747387 (-) 216 WP_017723390.1 DUF951 domain-containing protein -
  LG295_RS13140 (LG295_13130) - 2747409..2748293 (-) 885 WP_107557802.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19089.61 Da        Isoelectric Point: 4.9056

>NTDB_id=614706 LG295_RS13115 WP_039069219.1 2743852..2744367(-) (ssbA) [Staphylococcus pseudoxylosus strain SLM-183]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNTSNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=614706 LG295_RS13115 WP_039069219.1 2743852..2744367(-) (ssbA) [Staphylococcus pseudoxylosus strain SLM-183]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTATTTTTGTAACTGAAGTAGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGTGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAATAATAACAACAATACATCAAATAATAATCAATCAGATAATCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418IFQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.632
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.591
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

64.327

0.374