Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   NQZ84_RS02895 Genome accession   NZ_CP102094
Coordinates   579527..580210 (+) Length   227 a.a.
NCBI ID   WP_257049170.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 574527..585210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS02875 (NQZ84_02875) - 574607..576118 (+) 1512 WP_257049164.1 ABC transporter permease/substrate-binding protein -
  NQZ84_RS02880 (NQZ84_02880) - 576128..576889 (+) 762 WP_257049166.1 nuclear transport factor 2 family protein -
  NQZ84_RS02885 (NQZ84_02885) - 577037..578161 (+) 1125 WP_257049168.1 aminotransferase -
  NQZ84_RS02890 (NQZ84_02890) - 578176..579357 (-) 1182 WP_015647174.1 DUF2974 domain-containing protein -
  NQZ84_RS02895 (NQZ84_02895) braR 579527..580210 (+) 684 WP_257049170.1 response regulator transcription factor Regulator
  NQZ84_RS02900 (NQZ84_02900) - 580203..581195 (+) 993 WP_015647172.1 sensor histidine kinase -
  NQZ84_RS02905 (NQZ84_02905) - 581291..582049 (+) 759 WP_015647171.1 ABC transporter ATP-binding protein -
  NQZ84_RS02910 (NQZ84_02910) - 582051..584063 (+) 2013 WP_257049175.1 ABC transporter permease -
  NQZ84_RS02915 (NQZ84_02915) - 584265..584414 (+) 150 WP_195156522.1 hypothetical protein -
  NQZ84_RS02920 (NQZ84_02920) - 584411..584728 (+) 318 WP_024384973.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26551.82 Da        Isoelectric Point: 4.6132

>NTDB_id=614685 NQZ84_RS02895 WP_257049170.1 579527..580210(+) (braR) [Streptococcus suis strain 12RC1]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQLVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDLIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=614685 NQZ84_RS02895 WP_257049170.1 579527..580210(+) (braR) [Streptococcus suis strain 12RC1]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTTGGTGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACTTAAAGACCATGCAGGTGTCCTATGGACAGCTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATTTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

38.596

100

0.388