Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG282_RS23280 Genome accession   NZ_CP085020
Coordinates   4576426..4576938 (-) Length   170 a.a.
NCBI ID   WP_095371344.1    Uniprot ID   -
Organism   Cytobacillus kochii strain SLM-180     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4571426..4581938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG282_RS23260 (LG282_23155) - 4572580..4573524 (-) 945 WP_404293072.1 YybS family protein -
  LG282_RS23265 (LG282_23160) - 4573739..4575010 (-) 1272 WP_281203002.1 MFS transporter -
  LG282_RS23270 (LG282_23165) - 4575011..4575499 (-) 489 WP_404293074.1 ArsR/SmtB family transcription factor -
  LG282_RS23275 (LG282_23170) rpsR 4576141..4576380 (-) 240 WP_095371345.1 30S ribosomal protein S18 -
  LG282_RS23280 (LG282_23175) ssbA 4576426..4576938 (-) 513 WP_095371344.1 single-stranded DNA-binding protein Machinery gene
  LG282_RS23285 (LG282_23180) rpsF 4576976..4577263 (-) 288 WP_095371343.1 30S ribosomal protein S6 -
  LG282_RS23290 (LG282_23185) ychF 4577524..4578624 (-) 1101 WP_095371342.1 redox-regulated ATPase YchF -
  LG282_RS23295 (LG282_23190) - 4578931..4579122 (-) 192 WP_180317033.1 DUF951 domain-containing protein -
  LG282_RS23300 (LG282_23195) yyaC 4579329..4579946 (+) 618 WP_251162478.1 spore protease YyaC -
  LG282_RS23305 (LG282_23200) - 4580265..4580966 (-) 702 WP_095371339.1 DUF554 domain-containing protein -
  LG282_RS23310 (LG282_23205) - 4581029..4581883 (-) 855 WP_095371338.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18956.63 Da        Isoelectric Point: 4.9622

>NTDB_id=614640 LG282_RS23280 WP_095371344.1 4576426..4576938(-) (ssbA) [Cytobacillus kochii strain SLM-180]
MMNRVVLVGRLTKDPELRYTPNGVAVATFTLAVNRTFTNQNGDREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVQAESVQFLEPRNAAGSQGGSNQYGGQRDDYSYGGNNNQNQRPYDNNRSNQGQTRVDQDPFANNGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=614640 LG282_RS23280 WP_095371344.1 4576426..4576938(-) (ssbA) [Cytobacillus kochii strain SLM-180]
ATGATGAATCGTGTAGTTCTAGTGGGGCGTTTAACGAAAGACCCAGAATTACGTTATACACCGAATGGAGTAGCAGTGGC
TACTTTTACTCTTGCTGTGAATCGTACATTTACGAATCAAAATGGAGATAGAGAAGCGGATTTCATTAATTGCGTTGTTT
GGAGAAAGCCTGCTGAAAACGTAGCGAACTTCCTTAAAAAAGGAAGCCTAGCTGGTGTCGATGGGCGCTTGCAAACACGT
AATTACGAAGGACAAGATGGCAAACGTGTATATGTGACTGAAGTTCAGGCAGAAAGCGTACAGTTTCTTGAACCAAGAAA
TGCTGCAGGCTCACAAGGTGGCTCGAATCAATATGGTGGCCAGAGAGATGATTATTCTTATGGTGGCAACAATAATCAGA
ATCAACGACCATATGATAATAACCGCAGCAACCAAGGCCAAACTCGTGTAGATCAAGATCCATTCGCTAATAACGGTCAA
ATCGATATTTCCGATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.556

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.427

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

62.353

0.382