Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NQD66_RS09975 Genome accession   NZ_CP101995
Coordinates   1966479..1967069 (-) Length   196 a.a.
NCBI ID   WP_000272487.1    Uniprot ID   Q8DWW6
Organism   Streptococcus agalactiae strain BCJB2983     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961479..1972069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD66_RS09940 (NQD66_09940) - 1961500..1961817 (-) 318 WP_000940932.1 DUF1292 domain-containing protein -
  NQD66_RS09945 (NQD66_09945) ruvX 1961843..1962262 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  NQD66_RS09950 (NQD66_09950) - 1962262..1962528 (-) 267 WP_000507055.1 IreB family regulatory phosphoprotein -
  NQD66_RS09955 (NQD66_09955) spx 1962730..1963128 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  NQD66_RS09960 (NQD66_09960) recA 1963344..1964483 (-) 1140 WP_001085741.1 recombinase RecA Machinery gene
  NQD66_RS09965 (NQD66_09965) cinA 1964557..1965816 (-) 1260 WP_001200978.1 competence/damage-inducible protein A Machinery gene
  NQD66_RS09970 (NQD66_09970) - 1965905..1966456 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  NQD66_RS09975 (NQD66_09975) ruvA 1966479..1967069 (-) 591 WP_000272487.1 Holliday junction branch migration protein RuvA Machinery gene
  NQD66_RS09980 (NQD66_09980) - 1967071..1968303 (-) 1233 WP_000657476.1 MFS transporter -
  NQD66_RS09985 (NQD66_09985) hexB 1968335..1970308 (-) 1974 WP_000034617.1 DNA mismatch repair endonuclease MutL Machinery gene
  NQD66_RS09990 (NQD66_09990) - 1970534..1970737 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21729.00 Da        Isoelectric Point: 5.7488

>NTDB_id=614448 NQD66_RS09975 WP_000272487.1 1966479..1967069(-) (ruvA) [Streptococcus agalactiae strain BCJB2983]
MYDYIKGKLSKITAKFIVVETAGLGYMIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=614448 NQD66_RS09975 WP_000272487.1 1966479..1967069(-) (ruvA) [Streptococcus agalactiae strain BCJB2983]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACAT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408