Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   NQD67_RS08590 Genome accession   NZ_CP101994
Coordinates   1683860..1684369 (-) Length   169 a.a.
NCBI ID   WP_000392204.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB3343     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1678860..1689369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD67_RS08565 (NQD67_08570) tsaD 1679369..1680379 (-) 1011 WP_000655092.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  NQD67_RS08570 (NQD67_08575) rimI 1680455..1680862 (-) 408 WP_000445944.1 ribosomal protein S18-alanine N-acetyltransferase -
  NQD67_RS08575 (NQD67_08580) tsaB 1680864..1681556 (-) 693 WP_000978603.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  NQD67_RS08580 (NQD67_08585) - 1681735..1681965 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  NQD67_RS08585 (NQD67_08590) rnjA 1682019..1683698 (+) 1680 WP_000065495.1 ribonuclease J1 -
  NQD67_RS08590 (NQD67_08595) lytF 1683860..1684369 (-) 510 WP_000392204.1 CHAP domain-containing protein Regulator
  NQD67_RS08595 (NQD67_08600) glnA 1684517..1685863 (-) 1347 WP_000156223.1 type I glutamate--ammonia ligase -
  NQD67_RS08600 (NQD67_08605) - 1685897..1686268 (-) 372 WP_000664341.1 MerR family transcriptional regulator -
  NQD67_RS08605 (NQD67_08610) - 1686348..1686887 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  NQD67_RS08610 (NQD67_08615) pgk 1687150..1688346 (-) 1197 WP_001096752.1 phosphoglycerate kinase -
  NQD67_RS08615 (NQD67_08620) - 1688481..1689350 (-) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18334.24 Da        Isoelectric Point: 4.4055

>NTDB_id=614331 NQD67_RS08590 WP_000392204.1 1683860..1684369(-) (lytF) [Streptococcus agalactiae strain BCJB3343]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASATSAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=614331 NQD67_RS08590 WP_000392204.1 1683860..1684369(-) (lytF) [Streptococcus agalactiae strain BCJB3343]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCACATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGCGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

54.331

75.148

0.408